Factsheet for Bra017831.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	plastid
EpiLoc:	nucleus
MultiLoc:	mitochondrion
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY29564	Canola	nucleus	99.57	99.57
Bra011772.1-P	Field mustard	nucleus	74.57	73.0
AT4G37540.1	Thale cress	nucleus	68.53	66.25
PGSC0003DMT400064185	Potato	nucleus	55.6	60.85
Solyc02g092550.2.1	Tomato	extracellular	55.6	59.17
GSMUA_Achr3P18860_001	Banana	cytosol	48.28	58.95
VIT_07s0129g00330.t01	Wine grape	nucleus	57.33	58.33
KRH58049	Soybean	mitochondrion, nucleus	55.6	56.83
KRH04451	Soybean	nucleus	56.03	56.52
GSMUA_Achr3P30130_001	Banana	nucleus	49.14	54.81
Bra012913.1-P	Field mustard	nucleus	56.03	53.94
Bra037847.1-P	Field mustard	nucleus	54.74	53.81
KRH28374	Soybean	nucleus	55.6	53.75
KRH77108	Soybean	nucleus	56.03	53.5
Bra036040.1-P	Field mustard	nucleus	56.47	53.47
Bra031833.1-P	Field mustard	nucleus	54.74	52.7
GSMUA_Achr7P26260_001	Banana	mitochondrion	47.84	52.36
GSMUA_Achr4P14150_001	Banana	mitochondrion	48.71	52.31
GSMUA_Achr6P07770_001	Banana	mitochondrion	40.95	51.63
Bra012164.1-P	Field mustard	nucleus	56.9	51.56
GSMUA_Achr2P13440_001	Banana	mitochondrion, nucleus, plastid	44.4	49.28
GSMUA_Achr4P32550_001	Banana	mitochondrion	40.95	45.24
TraesCS4B01G078800.1	Wheat	nucleus	41.38	41.74
HORVU4Hr1G013380.2	Barley	nucleus	40.95	41.67
TraesCS4D01G077600.1	Wheat	mitochondrion, nucleus, plastid	40.95	41.3
TraesCS4A01G236200.1	Wheat	mitochondrion, nucleus, plastid	41.38	41.2
Os03t0609500-01	Rice	cytosol, nucleus, plastid	40.52	40.52
KXG38039	Sorghum	mitochondrion, nucleus, plastid	40.52	38.06
Zm00001d033347_P001	Maize	mitochondrion, nucleus, plastid	39.22	36.26
Bra004315.1-P	Field mustard	mitochondrion	31.9	31.22
Bra021433.1-P	Field mustard	nucleus	32.76	28.79

Protein Annotations

EnsemblPlants:Bra017831.1	EnsemblPlants:Bra017831.1-P	EnsemblPlantsGene:Bra017831	InterPro:IPR004883	InterPro:LOB	PANTHER:PTHR31304
PANTHER:PTHR31304:SF1	PFAM:PF03195	PFscan:PS50891	SEG:seg	UniParc:UPI0002540CEE	UniProt:M4DMU5
MapMan:15.5.24	:	:	:	:	:

Description

AT4G37540 (E=1e-074) LBD39 | LBD39 (LOB DOMAIN-CONTAINING PROTEIN 39)

Coordinates

chrA03:-:30772548..30773423

Molecular Weight (calculated)

25302.5 Da

IEP (calculated)

8.851

GRAVY (calculated)

-0.119

Length

232 amino acids

Sequence
(BLAST)

001: MSCNGCRVLR KGCSETCILR PCFQWIESAE SQGHATLFVA KFFGRAGLMT FISAVPELNR PALFQSLLFE ACGRTVNPVN GAAGLLGSGN WHVCQAAVET
101: VLRGGTLRPI SDLLPSPSLI SSNDSTVICT DIGRFSTSRT KLSTSDMKEP PVNRRRSKTE RSESVIDVQL NHRLDLTIPV VPVPLLPPTP FRKVVNGERP
201: GSPSEESVTT SCSENGIIGY NKRERKLLNL FV

Best Arabidopsis Sequence Match ( AT4G37540.1 )
(BLAST)

001: MSCNGCRVLR KGCSETCILR PCLQWIESAE SQGHATVFVA KFFGRAGLMS FISSVPELQR PALFQSLLFE ACGRTVNPVN GAVGMLWTRN WHVCQAAVET
101: VLRGGTLRPI SDLLESPSLM ISCDESSEIW HQDVSRNQTH HCRFSTSRST TEMKDSLVNR KRLKSDSDLD LQVNHGLTLT APAVPVPFLP PSSFCKVVKG
201: DRPGSPSEES VTTSCWENGM RGDNKQKRNK GEKKLLNLFV

Arabidopsis Description

LBD39LOB domain-containing protein 39 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZE8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.