Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- plasma membrane 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX69315 | Canola | nucleus | 69.58 | 74.89 |
| Bra011772.1-P | Field mustard | nucleus | 70.83 | 71.73 |
| CDX75662 | Canola | nucleus | 70.83 | 71.73 |
| CDX72636 | Canola | mitochondrion, nucleus | 68.75 | 71.12 |
| CDY29564 | Canola | nucleus | 66.67 | 68.97 |
| Bra017831.1-P | Field mustard | nucleus | 66.25 | 68.53 |
| CDX81265 | Canola | nucleus | 67.92 | 68.49 |
| GSMUA_Achr3P18860_001 | Banana | cytosol | 50.42 | 63.68 |
| VIT_07s0129g00330.t01 | Wine grape | nucleus | 58.75 | 61.84 |
| PGSC0003DMT400064185 | Potato | nucleus | 54.17 | 61.32 |
| KRH04451 | Soybean | nucleus | 58.75 | 61.3 |
| KRH58049 | Soybean | mitochondrion, nucleus | 57.92 | 61.23 |
| Solyc02g092550.2.1 | Tomato | extracellular | 54.17 | 59.63 |
| GSMUA_Achr3P30130_001 | Banana | nucleus | 51.25 | 59.13 |
| AT3G49940.1 | Thale cress | nucleus | 60.42 | 58.7 |
| KRH28374 | Soybean | nucleus | 57.08 | 57.08 |
| KRH77108 | Soybean | nucleus | 57.5 | 56.79 |
| GSMUA_Achr7P26260_001 | Banana | mitochondrion | 50.0 | 56.6 |
| GSMUA_Achr4P14150_001 | Banana | mitochondrion | 50.83 | 56.48 |
| AT5G67420.2 | Thale cress | nucleus | 58.33 | 56.0 |
| GSMUA_Achr6P07770_001 | Banana | mitochondrion | 42.08 | 54.89 |
| GSMUA_Achr2P13440_001 | Banana | mitochondrion, nucleus, plastid | 47.5 | 54.55 |
| GSMUA_Achr4P32550_001 | Banana | mitochondrion | 43.33 | 49.52 |
| TraesCS4B01G078800.1 | Wheat | nucleus | 42.5 | 44.35 |
| TraesCS4D01G077600.1 | Wheat | mitochondrion, nucleus, plastid | 42.08 | 43.91 |
| HORVU4Hr1G013380.2 | Barley | nucleus | 41.67 | 43.86 |
| TraesCS4A01G236200.1 | Wheat | mitochondrion, nucleus, plastid | 42.5 | 43.78 |
| Os03t0609500-01 | Rice | cytosol, nucleus, plastid | 40.83 | 42.24 |
| KXG38039 | Sorghum | mitochondrion, nucleus, plastid | 40.42 | 39.27 |
| AT1G67100.1 | Thale cress | mitochondrion | 36.67 | 37.77 |
| Zm00001d033347_P001 | Maize | mitochondrion, nucleus, plastid | 38.75 | 37.05 |
| AT1G68510.1 | Thale cress | mitochondrion, nucleus | 32.5 | 33.48 |
| AT3G02550.1 | Thale cress | nucleus | 33.33 | 30.42 |
Protein Annotations
| MapMan:15.5.24 | EntrezGene:829909 | UniProt:A0A178V3Q3 | EMBL:AB473874 | ProteinID:AEE86808.1 | ArrayExpress:AT4G37540 |
| EnsemblPlantsGene:AT4G37540 | RefSeq:AT4G37540 | TAIR:AT4G37540 | RefSeq:AT4G37540-TAIR-G | EnsemblPlants:AT4G37540.1 | TAIR:AT4G37540.1 |
| EMBL:AY072144 | EMBL:AY087291 | EMBL:AY122976 | ProteinID:CAB38293.1 | ProteinID:CAB80419.1 | GO:GO:0005575 |
| GO:GO:0008150 | InterPro:IPR004883 | Symbol:LBD39 | InterPro:LOB | RefSeq:NP_195470.1 | ProteinID:OAP00035.1 |
| PFAM:PF03195 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 |
| PFscan:PS50891 | PANTHER:PTHR31304 | PANTHER:PTHR31304:SF1 | UniProt:Q9SZE8 | UniParc:UPI00000A8BB1 | : |
Description
LBD39LOB domain-containing protein 39 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZE8]
Coordinates
chr4:-:17639393..17640925
Molecular Weight (calculated)
26613.9 Da
IEP (calculated)
8.508
GRAVY (calculated)
-0.297
Length
240 amino acids
Sequence
(BLAST)
(BLAST)
001: MSCNGCRVLR KGCSETCILR PCLQWIESAE SQGHATVFVA KFFGRAGLMS FISSVPELQR PALFQSLLFE ACGRTVNPVN GAVGMLWTRN WHVCQAAVET
101: VLRGGTLRPI SDLLESPSLM ISCDESSEIW HQDVSRNQTH HCRFSTSRST TEMKDSLVNR KRLKSDSDLD LQVNHGLTLT APAVPVPFLP PSSFCKVVKG
201: DRPGSPSEES VTTSCWENGM RGDNKQKRNK GEKKLLNLFV
101: VLRGGTLRPI SDLLESPSLM ISCDESSEIW HQDVSRNQTH HCRFSTSRST TEMKDSLVNR KRLKSDSDLD LQVNHGLTLT APAVPVPFLP PSSFCKVVKG
201: DRPGSPSEES VTTSCWENGM RGDNKQKRNK GEKKLLNLFV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.