CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 4
plasma membrane 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra011772.1-P	Field mustard	nucleus	100.0	100.0
CDX81265	Canola	nucleus	91.56	91.18
CDX69315	Canola	nucleus	80.17	85.2
CDX72636	Canola	mitochondrion, nucleus	73.84	75.43
CDY29564	Canola	nucleus	73.42	75.0
AT4G37540.1	Thale cress	nucleus	71.73	70.83
PGSC0003DMT400064185	Potato	nucleus	56.12	62.74
CDY37852	Canola	nucleus	57.38	62.67
VIT_07s0129g00330.t01	Wine grape	nucleus	59.92	62.28
CDY58550	Canola	nucleus	56.96	62.21
GSMUA_Achr3P18860_001	Banana	cytosol	49.79	62.11
CDY43575	Canola	nucleus	56.96	61.09
Solyc02g092550.2.1	Tomato	extracellular	55.7	60.55
KRH04451	Soybean	nucleus	58.23	60.0
KRH58049	Soybean	mitochondrion, nucleus	57.38	59.91
CDY17741	Canola	nucleus	55.27	59.82
CDY67844	Canola	nucleus	56.96	59.47
CDY67455	Canola	nucleus	56.96	59.21
CDX81315	Canola	nucleus	58.23	58.47
GSMUA_Achr3P30130_001	Banana	nucleus	50.63	57.69
KRH28374	Soybean	nucleus	58.23	57.5
KRH77108	Soybean	nucleus	58.65	57.2
CDY02101	Canola	nucleus	57.81	56.85
CDY23026	Canola	nucleus	56.96	56.25
GSMUA_Achr4P14150_001	Banana	mitochondrion	51.05	56.02
GSMUA_Achr6P07770_001	Banana	mitochondrion	42.62	54.89
GSMUA_Achr7P26260_001	Banana	mitochondrion	48.95	54.72
GSMUA_Achr2P13440_001	Banana	mitochondrion, nucleus, plastid	45.99	52.15
GSMUA_Achr4P32550_001	Banana	mitochondrion	43.88	49.52
CDY54302	Canola	cytosol, mitochondrion, nucleus	28.27	45.27
TraesCS4B01G078800.1	Wheat	nucleus	42.62	43.91
TraesCS4D01G077600.1	Wheat	mitochondrion, nucleus, plastid	42.19	43.48
HORVU4Hr1G013380.2	Barley	nucleus	41.77	43.42
TraesCS4A01G236200.1	Wheat	mitochondrion, nucleus, plastid	42.19	42.92
Os03t0609500-01	Rice	cytosol, nucleus, plastid	40.93	41.81
KXG38039	Sorghum	mitochondrion, nucleus, plastid	40.93	39.27
Zm00001d033347_P001	Maize	mitochondrion, nucleus, plastid	39.66	37.45
CDY34735	Canola	nucleus	29.54	37.23
CDY12617	Canola	mitochondrion	37.97	36.44
CDY42342	Canola	mitochondrion	37.97	36.44
CDY38588	Canola	cytosol, mitochondrion, nucleus	32.91	32.5
CDX96013	Canola	mitochondrion	32.07	32.07
CDX91999	Canola	nucleus	34.6	31.54
CDX74249	Canola	nucleus	34.6	31.54

Protein Annotations

EnsemblPlants:CDX75662	EnsemblPlantsGene:GSBRNA2T00121588001	InterPro:IPR004883	InterPro:LOB	PANTHER:PTHR31304	PANTHER:PTHR31304:SF1
PFAM:PF03195	PFscan:PS50891	ProteinID:CDX75662	ProteinID:CDX75662.1	SEG:seg	UniParc:UPI00025465F6
MapMan:15.5.24	:	:	:	:	:

Description

BnaA01g00400D

Coordinates

chrLK031804:-:2194025..2195274

Molecular Weight (calculated)

26169.2 Da

IEP (calculated)

7.994

GRAVY (calculated)

-0.328

Length

237 amino acids

Sequence
(BLAST)

001: MSCNGCRVLR KGCSETCILR PCLQWIESAE SQGHATVFVA KFFGRAGLMS FISAVPEQNR PALFQSLLFE ACGRTVNPVN GAVGMLWTGN WHVCQAAVET
101: VLRGGTLRPI SDLLESPSLN SSDESTEIWR LQRRDGFSTS RSKLITTGVE ESPVNRKRSK TEWSEPDMEL QLNHGLALTG PVVPVPFLPP PQFSKALNRD
201: HPGSPSEESV TTSCYENGIS GDGYRNKRER KLLNLFV

Best Arabidopsis Sequence Match ( AT4G37540.1 )
(BLAST)

001: MSCNGCRVLR KGCSETCILR PCLQWIESAE SQGHATVFVA KFFGRAGLMS FISSVPELQR PALFQSLLFE ACGRTVNPVN GAVGMLWTRN WHVCQAAVET
101: VLRGGTLRPI SDLLESPSLM ISCDESSEIW HQDVSRNQTH HCRFSTSRST TEMKDSLVNR KRLKSDSDLD LQVNHGLTLT APAVPVPFLP PSSFCKVVKG
201: DRPGSPSEES VTTSCWENGM RGDNKQKRNK GEKKLLNLFV

Arabidopsis Description

LBD39LOB domain-containing protein 39 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZE8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.