CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH28374	Soybean	nucleus	95.06	96.25
KRH05602	Soybean	nucleus	19.34	77.05
KRH04451	Soybean	nucleus	69.55	73.48
KRH58049	Soybean	mitochondrion, nucleus	67.9	72.69
VIT_07s0129g00330.t01	Wine grape	nucleus	65.84	70.18
PGSC0003DMT400064185	Potato	nucleus	60.49	69.34
GSMUA_Achr3P18860_001	Banana	cytosol	51.44	65.79
Solyc02g092550.2.1	Tomato	extracellular	58.44	65.14
CDX69315	Canola	nucleus	57.2	62.33
GSMUA_Achr3P30130_001	Banana	nucleus	52.26	61.06
GSMUA_Achr4P14150_001	Banana	mitochondrion	52.67	59.26
GSMUA_Achr6P07770_001	Banana	mitochondrion	44.86	59.24
Bra011772.1-P	Field mustard	nucleus	57.2	58.65
CDX75662	Canola	nucleus	57.2	58.65
GSMUA_Achr7P26260_001	Banana	mitochondrion	51.03	58.49
KRH15442	Soybean	mitochondrion, nucleus	41.15	58.48
AT4G37540.1	Thale cress	nucleus	56.79	57.5
CDX72636	Canola	mitochondrion, nucleus	54.73	57.33
CDY29564	Canola	nucleus	53.91	56.47
KRH35680	Soybean	cytosol, mitochondrion, nucleus	39.51	56.14
Bra017831.1-P	Field mustard	nucleus	53.5	56.03
CDX81265	Canola	nucleus	54.73	55.88
KRG91097	Soybean	mitochondrion, nucleus, plasma membrane	39.09	55.56
KRH61393	Soybean	nucleus	41.56	54.59
GSMUA_Achr2P13440_001	Banana	mitochondrion, nucleus, plastid	45.68	53.11
GSMUA_Achr4P32550_001	Banana	mitochondrion	44.86	51.9
KRH05603	Soybean	cytosol, extracellular	20.16	46.23
Os03t0609500-01	Rice	cytosol, nucleus, plastid	42.8	44.83
TraesCS4B01G078800.1	Wheat	nucleus	40.74	43.04
HORVU4Hr1G013380.2	Barley	nucleus	40.33	42.98
TraesCS4D01G077600.1	Wheat	mitochondrion, nucleus, plastid	40.33	42.61
TraesCS4A01G236200.1	Wheat	mitochondrion, nucleus, plastid	40.74	42.49
KXG38039	Sorghum	mitochondrion, nucleus, plastid	39.92	39.27
Zm00001d033347_P001	Maize	mitochondrion, nucleus, plastid	39.09	37.85
KRH45269	Soybean	nucleus	30.86	34.25
KRH46923	Soybean	mitochondrion	39.09	32.09
KRH48482	Soybean	mitochondrion	30.45	31.9
KRH01759	Soybean	mitochondrion	39.51	31.89
KRG90816	Soybean	nucleus	29.22	31.7
KRH18248	Soybean	nucleus	37.04	31.25
KRG93864	Soybean	nucleus	36.63	30.38

Protein Annotations

EMBL:ACUP02000657	EnsemblPlants:KRH77108	EnsemblPlantsGene:GLYMA_01G192600	EntrezGene:100816189	InterPro:IPR004883	InterPro:LOB
PANTHER:PTHR31304	PANTHER:PTHR31304:SF1	PFAM:PF03195	PFscan:PS50891	ProteinID:KRH77108	ProteinID:KRH77108.1
UniParc:UPI00023371CD	UniProt:I1J9D3	MapMan:15.5.24	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:52700419..52702751

Molecular Weight (calculated)

26476.4 Da

IEP (calculated)

7.266

GRAVY (calculated)

-0.351

Length

243 amino acids

Sequence
(BLAST)

001: MSCNGCRVLR KGCSESCILR PCLQWIDTPE AQGHATVFVA KFFGRADLMS FISNVPEPQR PALFQSLLFE ACGRTVNPVN GAVGLLWTGN WHVCQAAVET
101: VLRGGTVRPM PELLGLDAPT PTADDASEGE VTCTDKWRVR DPNPNFPGTR FPGSRSDKAG SGGKRKRFEE LAKLQTATTD LNLRLTPSFL QNAASYGCRQ
201: EIRWPGSPSM NSEESGTTTA CLESGIGDHY AHDGDRKVLN LFI

Best Arabidopsis Sequence Match ( AT3G49940.1 )
(BLAST)

001: MSCNGCRVLR KGCSENCILR PCIQWIESPE AQGHATVFVA KFFGRAGLMS FISAVPESQC PALFQSLLYE ACGRTVNPVN GAVGLLWTGN WNVCQAAVET
101: VLRGGSLKPI PELLNGGGFA GFPSPTSDEA SEICTEMLNL RKADDSGDRN IYHHCRFSSS RSRSRSTASP PKRKRLSSEQ QPSSELDLSL IPIYPIKTLP
201: FKEDTPSMYS EESVTTVSFQ NNNAGDRYVR CGGGGGGATT KLLNLFA

Arabidopsis Description

LBD38LOB domain-containing protein 38 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN23]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.