CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG93864	Soybean	nucleus	92.71	91.13
AT1G67100.1	Thale cress	mitochondrion	55.9	69.1
KRH01759	Soybean	mitochondrion	71.18	68.11
KRH46923	Soybean	mitochondrion	69.1	67.23
KRH05602	Soybean	nucleus	14.24	67.21
GSMUA_Achr4P06820_001	Banana	cytosol, mitochondrion, plastid	53.47	65.81
GSMUA_Achr4P13790_001	Banana	mitochondrion	52.43	65.09
CDY12617	Canola	mitochondrion	54.86	63.97
CDY42342	Canola	mitochondrion	54.86	63.97
GSMUA_Achr9P21360_001	Banana	mitochondrion	48.61	62.5
VIT_14s0006g02950.t01	Wine grape	mitochondrion	60.07	61.13
KRH45269	Soybean	nucleus	36.46	47.95
KRH48482	Soybean	mitochondrion	36.81	45.69
KRG90816	Soybean	nucleus	35.42	45.54
GSMUA_Achr4P03700_001	Banana	cytosol, mitochondrion, nucleus	51.04	45.09
KRH15442	Soybean	mitochondrion, nucleus	26.04	43.86
KRH35680	Soybean	cytosol, mitochondrion, nucleus	25.0	42.11
KRH61393	Soybean	nucleus	26.74	41.62
KRG91097	Soybean	mitochondrion, nucleus, plasma membrane	24.65	41.52
KRH58049	Soybean	mitochondrion, nucleus	30.9	39.21
KRH04451	Soybean	nucleus	31.25	39.13
KRH28374	Soybean	nucleus	31.25	37.5
KRH77108	Soybean	nucleus	31.25	37.04
KRH05603	Soybean	cytosol, extracellular	12.85	34.91
Os01t0129600-00	Rice	cytosol	33.33	28.32

Protein Annotations

EMBL:ACUP02008049	EnsemblPlants:KRH18248	EnsemblPlantsGene:GLYMA_13G046300	EntrezGene:100814175	InterPro:IPR004883	InterPro:LOB
InterPro:LOBD	PANTHER:PTHR31304	PANTHER:PTHR31304:SF8	PFAM:PF03195	PFscan:PS50891	PIRSF:PIRSF038155
ProteinID:KRH18248	ProteinID:KRH18248.1	SEG:seg	UniParc:UPI000233C5DF	UniProt:I1LX21	MapMan:15.5.24

Description

hypothetical protein

Coordinates

chr13:+:14064352..14066384

Molecular Weight (calculated)

31339.5 Da

IEP (calculated)

7.947

GRAVY (calculated)

-0.390

Length

288 amino acids

Sequence
(BLAST)

001: MRMSCNGCRV LRKGCSEDCS IRPCLQWIKN PESQANATVF LAKFYGRAGL MNLINAGPEN LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GSWQLCQAAV
101: EAVLKGEPIT PITSEAAANG RAPPLKAYDI RHVSKDQNSA NETPKTKTRS RFKRTSGTLI KPKASKGTGF VPVEPEMANR TASHESGLSH LSEATAMVEG
201: ESKESESVVS MDTSNLIHEE PEWVAKTSDG TGESGNEIGL ELTLGFEPVS RLHHVVPMKK RKIIELKSCG DSAEKDSCKM ELGLEYPA

Best Arabidopsis Sequence Match ( AT3G02550.1 )
(BLAST)

001: MRMSCNGCRV LRKGCSEDCS IRPCLAWIKS PEAQANATVF LAKFYGRAGL MNLINAGPNH LRPGIFRSLL HEACGRIVNP IYGSVGLLWS GNWQLCQDAV
101: EAVMKGEPVK EIATDAATIG QGPPLKIYDI RHISKDDNSA AAATGSTDLK LAKTRRAKRV STVAIQAESE GKSDEASHDS SLSHQSEIVA AHEGESKESE
201: SNVSEVLAFS PPAVKGSGEI KLDLTLRLEP VSRAYHVVPV KKRRIGVFGT CQKESTCKTE LML

Arabidopsis Description

LBD41LOB domain-containing protein 41 [Source:UniProtKB/Swiss-Prot;Acc:Q9M886]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.