CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

plastid 1
nucleus 4
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH05602	Soybean	nucleus	35.09	98.36
KRH61393	Soybean	nucleus	55.56	51.35
KRG91097	Soybean	mitochondrion, nucleus, plasma membrane	50.88	50.88
VIT_18s0001g09250.t01	Wine grape	nucleus	64.33	49.55
KRH35680	Soybean	cytosol, mitochondrion, nucleus	49.12	49.12
KRH05603	Soybean	cytosol, extracellular	30.41	49.06
GSMUA_Achr3P18860_001	Banana	cytosol	53.8	48.42
GSMUA_Achr3P30130_001	Banana	nucleus	55.56	45.67
GSMUA_Achr6P07770_001	Banana	mitochondrion	49.12	45.65
GSMUA_Achr7P26260_001	Banana	mitochondrion	54.39	43.87
GSMUA_Achr4P14150_001	Banana	mitochondrion	54.97	43.52
KRH58049	Soybean	mitochondrion, nucleus	57.31	43.17
KRH04451	Soybean	nucleus	57.89	43.04
GSMUA_Achr2P13440_001	Banana	mitochondrion, nucleus, plastid	52.05	42.58
KRH28374	Soybean	nucleus	59.65	42.5
Solyc04g077990.2.1	Tomato	nucleus, plasma membrane, plastid	49.71	41.67
PGSC0003DMT400055393	Potato	nucleus	49.71	41.67
GSMUA_Achr4P32550_001	Banana	mitochondrion	50.88	41.43
KRH77108	Soybean	nucleus	58.48	41.15
HORVU4Hr1G013380.2	Barley	nucleus	43.86	32.89
Os03t0609500-01	Rice	cytosol, nucleus, plastid	44.44	32.76
TraesCS4A01G236200.1	Wheat	mitochondrion, nucleus, plastid	44.44	32.62
TraesCS4D01G077600.1	Wheat	mitochondrion, nucleus, plastid	43.86	32.61
TraesCS4B01G078800.1	Wheat	nucleus	43.86	32.61
KXG38039	Sorghum	mitochondrion, nucleus, plastid	45.03	31.17
Zm00001d033347_P001	Maize	mitochondrion, nucleus, plastid	44.44	30.28
KRH45269	Soybean	nucleus	38.6	30.14
KRG90816	Soybean	nucleus	38.01	29.02
KRH48482	Soybean	mitochondrion	38.01	28.02
KRH18248	Soybean	nucleus	43.86	26.04
KRH46923	Soybean	mitochondrion	44.44	25.68
KRG93864	Soybean	nucleus	43.86	25.6
KRH01759	Soybean	mitochondrion	43.27	24.58

Protein Annotations

EMBL:ACUP02008595	EnsemblPlants:KRH15442	EnsemblPlantsGene:GLYMA_14G088200	EntrezGene:100796966	InterPro:IPR004883	InterPro:LOB
PANTHER:PTHR31304	PANTHER:PTHR31304:SF1	PFAM:PF03195	PFscan:PS50891	ProteinID:KRH15442	ProteinID:KRH15442.1
UniParc:UPI000233B595	UniProt:K7M5P6	MapMan:15.5.24	:	:	:

Description

hypothetical protein

Coordinates

chr14:-:7908936..7910699

Molecular Weight (calculated)

19174.0 Da

IEP (calculated)

8.065

GRAVY (calculated)

-0.282

Length

171 amino acids

Sequence
(BLAST)

001: MSCNGCRVLR KGCSDTCPLR SCLQWIESSE SQRHATLFLA KFFGRSDLMS FISSVPETKR PALFQSLLFE GCGRTVNPVN GAVGLLWSGN WHVCQAAVQT
101: VLSGGVLRPL AETFTGDSDD TRYHLRPLTL MHDVREMNDN SSLMNRVNRP QESEMASYDG HKKNQILNLF M

Best Arabidopsis Sequence Match ( AT4G37540.1 )
(BLAST)

001: MSCNGCRVLR KGCSETCILR PCLQWIESAE SQGHATVFVA KFFGRAGLMS FISSVPELQR PALFQSLLFE ACGRTVNPVN GAVGMLWTRN WHVCQAAVET
101: VLRGGTLRPI SDLLESPSLM ISCDESSEIW HQDVSRNQTH HCRFSTSRST TEMKDSLVNR KRLKSDSDLD LQVNHGLTLT APAVPVPFLP PSSFCKVVKG
201: DRPGSPSEES VTTSCWENGM RGDNKQKRNK GEKKLLNLFV

Arabidopsis Description

LBD39LOB domain-containing protein 39 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZE8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.