Factsheet for VIT_18s0001g09250.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH05602	Soybean	nucleus	22.52	81.97
KRH15442	Soybean	mitochondrion, nucleus	49.55	64.33
GSMUA_Achr3P18860_001	Banana	cytosol	48.2	56.32
KRH61393	Soybean	nucleus	45.05	54.05
GSMUA_Achr3P30130_001	Banana	nucleus	49.1	52.4
VIT_07s0129g00330.t01	Wine grape	nucleus	53.6	52.19
GSMUA_Achr6P07770_001	Banana	mitochondrion	43.24	52.17
VIT_03s0091g00670.t01	Wine grape	cytosol	45.05	51.28
Solyc04g077990.2.1	Tomato	nucleus, plasma membrane, plastid	46.85	50.98
GSMUA_Achr7P26260_001	Banana	mitochondrion	48.2	50.47
PGSC0003DMT400055393	Potato	nucleus	45.95	50.0
GSMUA_Achr4P14150_001	Banana	mitochondrion	47.75	49.07
GSMUA_Achr2P13440_001	Banana	mitochondrion, nucleus, plastid	43.69	46.41
KRH05603	Soybean	cytosol, extracellular	21.17	44.34
GSMUA_Achr4P32550_001	Banana	mitochondrion	41.89	44.29
HORVU4Hr1G013380.2	Barley	nucleus	38.74	37.72
Os03t0609500-01	Rice	cytosol, nucleus, plastid	39.19	37.5
TraesCS4B01G078800.1	Wheat	nucleus	38.29	36.96
TraesCS4D01G077600.1	Wheat	mitochondrion, nucleus, plastid	38.29	36.96
TraesCS4A01G236200.1	Wheat	mitochondrion, nucleus, plastid	38.29	36.48
KXG38039	Sorghum	mitochondrion, nucleus, plastid	38.74	34.82
Zm00001d033347_P001	Maize	mitochondrion, nucleus, plastid	38.74	34.26
VIT_01s0011g03540.t01	Wine grape	nucleus	37.84	33.2
VIT_01s0011g03530.t01	Wine grape	cytosol, nucleus, plastid	34.23	31.54
VIT_14s0006g02950.t01	Wine grape	mitochondrion	39.64	31.1
VIT_17s0000g03720.t01	Wine grape	mitochondrion, nucleus, plastid	37.84	30.88

Protein Annotations

ArrayExpress:VIT_18s0001g09250	EMBL:FN595227	EnsemblPlants:VIT_18s0001g09250.t01	EnsemblPlantsGene:VIT_18s0001g09250	EntrezGene:100255841	EntrezGene:LOC100255841
InterPro:IPR004883	InterPro:LOB	PANTHER:PTHR31304	PANTHER:PTHR31304:SF1	PFAM:PF03195	PFscan:PS50891
ProteinID:CBI19415	ProteinID:CBI19415.3	RefSeq:XP_002285250	RefSeq:XP_002285250.1	unigene:Vvi.12831	UniParc:UPI00015C7F77
UniProt:E0CP37	wikigene:100255841	wikigene:LOC100255841	MapMan:15.5.24	:	:

Description

No Description!

Coordinates

chr18:+:7746353..7747276

Molecular Weight (calculated)

24106.7 Da

IEP (calculated)

8.259

GRAVY (calculated)

-0.217

Length

222 amino acids

Sequence
(BLAST)

001: MSCNGCRVLR KGCSDSCILR TCLQWIENPE AQGYATLFVS KFFGRSDLMS FISAVPENKR PALFQSLLFE ACGRTVNPVN GAVGLLWTGN WHVCQAAVDT
101: VLAGGTLRPI PGILAGPIKP GFDEASATFC TDAWKLRDAY SLSKPFMRDN ASEEAKRIET QPPHLGISAT ARFSNKINAG RGKRSGTSFC SEGSSGTMSY
201: DGSDDDRNMS GCQERKLLNL FI

Best Arabidopsis Sequence Match ( AT3G49940.1 )
(BLAST)

001: MSCNGCRVLR KGCSENCILR PCIQWIESPE AQGHATVFVA KFFGRAGLMS FISAVPESQC PALFQSLLYE ACGRTVNPVN GAVGLLWTGN WNVCQAAVET
101: VLRGGSLKPI PELLNGGGFA GFPSPTSDEA SEICTEMLNL RKADDSGDRN IYHHCRFSSS RSRSRSTASP PKRKRLSSEQ QPSSELDLSL IPIYPIKTLP
201: FKEDTPSMYS EESVTTVSFQ NNNAGDRYVR CGGGGGGATT KLLNLFA

Arabidopsis Description

LBD38LOB domain-containing protein 38 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN23]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.