Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 2
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH05602 | Soybean | nucleus | 23.16 | 72.13 |
| GSMUA_Achr2P22720_001 | Banana | cytosol, mitochondrion, nucleus | 31.58 | 65.93 |
| GSMUA_Achr6P07770_001 | Banana | mitochondrion | 63.68 | 65.76 |
| GSMUA_Achr3P30130_001 | Banana | nucleus | 70.53 | 64.42 |
| GSMUA_Achr4P14150_001 | Banana | mitochondrion | 71.58 | 62.96 |
| GSMUA_Achr7P26260_001 | Banana | mitochondrion | 68.42 | 61.32 |
| PGSC0003DMT400064185 | Potato | nucleus | 66.32 | 59.43 |
| CDY58550 | Canola | nucleus | 65.26 | 57.14 |
| CDY37852 | Canola | nucleus | 65.26 | 57.14 |
| Solyc02g092550.2.1 | Tomato | extracellular | 65.26 | 56.88 |
| KRG91097 | Soybean | mitochondrion, nucleus, plasma membrane | 50.53 | 56.14 |
| KRH35680 | Soybean | cytosol, mitochondrion, nucleus | 50.0 | 55.56 |
| CDY67455 | Canola | nucleus | 66.32 | 55.26 |
| CDY17741 | Canola | nucleus | 63.68 | 55.25 |
| CDY67844 | Canola | nucleus | 65.79 | 55.07 |
| CDY43575 | Canola | nucleus | 63.68 | 54.75 |
| GSMUA_Achr2P13440_001 | Banana | mitochondrion, nucleus, plastid | 60.0 | 54.55 |
| VIT_07s0129g00330.t01 | Wine grape | nucleus | 64.74 | 53.95 |
| KRH04451 | Soybean | nucleus | 65.26 | 53.91 |
| KRH15442 | Soybean | mitochondrion, nucleus | 48.42 | 53.8 |
| KRH58049 | Soybean | mitochondrion, nucleus | 64.21 | 53.74 |
| CDX69315 | Canola | nucleus | 62.63 | 53.36 |
| VIT_03s0091g00670.t01 | Wine grape | cytosol | 54.74 | 53.33 |
| Bra037847.1-P | Field mustard | nucleus | 65.26 | 52.54 |
| KRH28374 | Soybean | nucleus | 65.79 | 52.08 |
| KRH61393 | Soybean | nucleus | 50.53 | 51.89 |
| Bra031833.1-P | Field mustard | nucleus | 65.26 | 51.45 |
| KRH77108 | Soybean | nucleus | 65.79 | 51.44 |
| CDX81315 | Canola | nucleus | 63.68 | 51.27 |
| GSMUA_Achr4P32550_001 | Banana | mitochondrion | 56.32 | 50.95 |
| AT4G37540.1 | Thale cress | nucleus | 63.68 | 50.42 |
| Solyc01g107190.2.1 | Tomato | mitochondrion, nucleus | 57.37 | 50.23 |
| PGSC0003DMT400066165 | Potato | mitochondrion, nucleus | 57.37 | 50.23 |
| AT5G67420.2 | Thale cress | nucleus | 65.79 | 50.0 |
| Bra011772.1-P | Field mustard | nucleus | 62.11 | 49.79 |
| CDX75662 | Canola | nucleus | 62.11 | 49.79 |
| Bra036040.1-P | Field mustard | nucleus | 63.68 | 49.39 |
| Bra012164.1-P | Field mustard | nucleus | 66.32 | 49.22 |
| CDX72636 | Canola | mitochondrion, nucleus | 60.0 | 49.14 |
| CDY29564 | Canola | nucleus | 59.47 | 48.71 |
| AT3G49940.1 | Thale cress | nucleus | 63.16 | 48.58 |
| Bra012913.1-P | Field mustard | nucleus | 61.58 | 48.55 |
| CDY23026 | Canola | nucleus | 61.05 | 48.33 |
| Bra017831.1-P | Field mustard | nucleus | 58.95 | 48.28 |
| VIT_18s0001g09250.t01 | Wine grape | nucleus | 56.32 | 48.2 |
| CDY02101 | Canola | nucleus | 61.05 | 48.13 |
| CDX81265 | Canola | nucleus | 58.95 | 47.06 |
| PGSC0003DMT400055393 | Potato | nucleus | 50.53 | 47.06 |
| Solyc04g077990.2.1 | Tomato | nucleus, plasma membrane, plastid | 50.53 | 47.06 |
| KRH05603 | Soybean | cytosol, extracellular | 23.16 | 41.51 |
| GSMUA_Achr4P13790_001 | Banana | mitochondrion | 45.79 | 37.5 |
| GSMUA_Achr3P29520_001 | Banana | mitochondrion | 45.79 | 37.34 |
| GSMUA_Achr9P21360_001 | Banana | mitochondrion | 43.68 | 37.05 |
| GSMUA_Achr4P06820_001 | Banana | cytosol, mitochondrion, plastid | 44.21 | 35.9 |
| GSMUA_Achr9P00580_001 | Banana | mitochondrion | 43.68 | 35.47 |
| GSMUA_AchrUn_... | Banana | cytosol, nucleus, plastid | 41.58 | 34.65 |
| GSMUA_Achr2P14600_001 | Banana | mitochondrion | 42.63 | 33.75 |
| GSMUA_Achr1P20970_001 | Banana | mitochondrion | 43.68 | 33.07 |
| GSMUA_Achr4P03700_001 | Banana | cytosol, mitochondrion, nucleus | 43.16 | 25.15 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr3P18860_001 | EnsemblPlants:GSMUA_Achr3T18860_001 | EnsemblPlantsGene:GSMUA_Achr3G18860_001 | InterPro:IPR004883 | InterPro:LOB | PANTHER:PTHR31304 |
| PANTHER:PTHR31304:SF1 | PFAM:PF03195 | PFscan:PS50891 | SEG:seg | UniParc:UPI000295E9BC | UniProt:M0SFV2 |
| MapMan:15.5.24 | : | : | : | : | : |
Description
DUF260 domain containing protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr3G18860_001]
Coordinates
chr3:-:20233207..20234171
Molecular Weight (calculated)
20198.4 Da
IEP (calculated)
8.269
GRAVY (calculated)
0.088
Length
190 amino acids
Sequence
(BLAST)
(BLAST)
001: MSCNGCRVLR KGCSEACVLR PCLQWIDTAE AQGHATVFVA KFFGRAGLMS FISAVPDHQR PALFQSLLFE ACGRTINPVG GAVGLLWTGN WHLCQAAVDT
101: VLRGGALRPL PSVKDGFPLA AEAKRCKAVP SPLPDRACDL DLCLSPLYPA GWQKAQRPAT PSMNSEGSVT TTTSGESSAG VEPRLLNLFV
101: VLRGGALRPL PSVKDGFPLA AEAKRCKAVP SPLPDRACDL DLCLSPLYPA GWQKAQRPAT PSMNSEGSVT TTTSGESSAG VEPRLLNLFV
001: MSCNGCRVLR KGCSENCILR PCIQWIETAD AQGHATVFVA KFFGRAGLMS FISAVPDSQR PALFQSLLYE ACGRTVNPVN GAIGMLWTGN WNICQAAVET
101: VLRGGSLRPI PELLTHGGGF AGFPSPTSEE ASEICTEMLN LQQNDSTDRN IYHHSRFSSS RSRSTMDSSS PTKRKRLSSE DQPSSELDLS LIPNFPIKQA
201: TPSSTRRRSV TPSMNSEDSG TTTTTTAFCD KGDVYGNGGG ETTKLLNLFV
101: VLRGGSLRPI PELLTHGGGF AGFPSPTSEE ASEICTEMLN LQQNDSTDRN IYHHSRFSSS RSRSTMDSSS PTKRKRLSSE DQPSSELDLS LIPNFPIKQA
201: TPSSTRRRSV TPSMNSEDSG TTTTTTAFCD KGDVYGNGGG ETTKLLNLFV
Arabidopsis Description
LBD37LOB domain-containing protein 37 [Source:UniProtKB/Swiss-Prot;Acc:Q9FN11]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.