Factsheet for GSMUA_Achr4P32550_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 4
mitochondrion 4
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P13440_001	Banana	mitochondrion, nucleus, plastid	74.29	74.64
KRH05602	Soybean	nucleus	19.52	67.21
GSMUA_Achr2P22720_001	Banana	cytosol, mitochondrion, nucleus	27.14	62.64
GSMUA_Achr3P18860_001	Banana	cytosol	50.95	56.32
GSMUA_Achr4P14150_001	Banana	mitochondrion	57.14	55.56
GSMUA_Achr3P30130_001	Banana	nucleus	51.9	52.4
GSMUA_Achr7P26260_001	Banana	mitochondrion	52.86	52.36
GSMUA_Achr6P07770_001	Banana	mitochondrion	45.71	52.17
KRG91097	Soybean	mitochondrion, nucleus, plasma membrane	41.43	50.88
KRH35680	Soybean	cytosol, mitochondrion, nucleus	41.43	50.88
KRH15442	Soybean	mitochondrion, nucleus	41.43	50.88
CDY37852	Canola	nucleus	52.38	50.69
CDY17741	Canola	nucleus	51.43	49.32
CDY58550	Canola	nucleus	50.95	49.31
KRH61393	Soybean	nucleus	42.38	48.11
KRH04451	Soybean	nucleus	52.38	47.83
VIT_07s0129g00330.t01	Wine grape	nucleus	51.9	47.81
PGSC0003DMT400064185	Potato	nucleus	47.62	47.17
KRH58049	Soybean	mitochondrion, nucleus	50.95	47.14
CDY67844	Canola	nucleus	50.95	47.14
CDY23026	Canola	nucleus	53.81	47.08
CDY43575	Canola	nucleus	49.52	47.06
CDY67455	Canola	nucleus	50.95	46.93
Bra012913.1-P	Field mustard	nucleus	53.81	46.89
CDY02101	Canola	nucleus	53.81	46.89
Bra037847.1-P	Field mustard	nucleus	52.38	46.61
Bra036040.1-P	Field mustard	nucleus	53.81	46.12
Bra031833.1-P	Field mustard	nucleus	52.86	46.06
AT3G49940.1	Thale cress	nucleus	53.81	45.75
Solyc02g092550.2.1	Tomato	extracellular	47.14	45.41
CDX81315	Canola	nucleus	50.95	45.34
CDX69315	Canola	nucleus	48.1	45.29
AT5G67420.2	Thale cress	nucleus	53.81	45.2
HORVU4Hr1G013380.2	Barley	nucleus	49.05	45.18
Solyc01g107190.2.1	Tomato	mitochondrion, nucleus	46.67	45.16
KRH28374	Soybean	nucleus	51.43	45.0
KRH77108	Soybean	nucleus	51.9	44.86
TraesCS4D01G077600.1	Wheat	mitochondrion, nucleus, plastid	49.05	44.78
TraesCS4B01G078800.1	Wheat	nucleus	49.05	44.78
PGSC0003DMT400066165	Potato	mitochondrion, nucleus	46.19	44.7
VIT_03s0091g00670.t01	Wine grape	cytosol	41.43	44.62
Os03t0609500-01	Rice	cytosol, nucleus, plastid	49.05	44.4
TraesCS4A01G236200.1	Wheat	mitochondrion, nucleus, plastid	49.05	44.21
CDX75662	Canola	nucleus	49.52	43.88
Bra011772.1-P	Field mustard	nucleus	49.52	43.88
Solyc04g077990.2.1	Tomato	nucleus, plasma membrane, plastid	42.38	43.63
Bra012164.1-P	Field mustard	nucleus	52.86	43.36
AT4G37540.1	Thale cress	nucleus	49.52	43.33
PGSC0003DMT400055393	Potato	nucleus	41.43	42.65
KXG38039	Sorghum	mitochondrion, nucleus, plastid	50.0	42.51
CDX81265	Canola	nucleus	48.1	42.44
VIT_18s0001g09250.t01	Wine grape	nucleus	44.29	41.89
CDY29564	Canola	nucleus	45.24	40.95
CDX72636	Canola	mitochondrion, nucleus	45.24	40.95
Bra017831.1-P	Field mustard	nucleus	45.24	40.95
Zm00001d033347_P001	Maize	mitochondrion, nucleus, plastid	46.19	38.65
KRH05603	Soybean	cytosol, extracellular	18.57	36.79
GSMUA_Achr3P29520_001	Banana	mitochondrion	36.19	32.62
GSMUA_Achr4P06820_001	Banana	cytosol, mitochondrion, plastid	36.19	32.48
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plastid	35.24	32.46
GSMUA_Achr4P13790_001	Banana	mitochondrion	35.24	31.9
GSMUA_Achr9P21360_001	Banana	mitochondrion	33.81	31.7
GSMUA_Achr9P00580_001	Banana	mitochondrion	34.76	31.2
GSMUA_Achr1P20970_001	Banana	mitochondrion	36.19	30.28
GSMUA_Achr2P14600_001	Banana	mitochondrion	34.29	30.0
GSMUA_Achr4P03700_001	Banana	cytosol, mitochondrion, nucleus	33.33	21.47

Protein Annotations

EnsemblPlants:GSMUA_Achr4P32550_001	EnsemblPlants:GSMUA_Achr4T32550_001	EnsemblPlantsGene:GSMUA_Achr4G32550_001	InterPro:IPR004883	InterPro:LOB	PANTHER:PTHR31304
PANTHER:PTHR31304:SF1	PFAM:PF03195	PFscan:PS50891	SEG:seg	UniParc:UPI00029652D5	UniProt:M0SU17
MapMan:15.5.24	:	:	:	:	:

Description

DUF260 domain containing protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr4G32550_001]

Coordinates

chr4:+:29260475..29261344

Molecular Weight (calculated)

22189.4 Da

IEP (calculated)

9.416

GRAVY (calculated)

-0.271

Length

210 amino acids

Sequence
(BLAST)

001: MSCNGCRVLR RGCSATCILR PCIQCIDGAG AQAHATAFVA KFFGRSTLLS FLSSVPLPRR PAAFRSLLYE ACGRTINPVT GATGLLWTGN WHLCQAAVAT
101: VLGGGTIHPL PELAGAADAK ELYEYQRRGV SSSSSSSSPP PRKRRRDYDA KRPPTRELYP MPESPDGGGD NKRRASTPSA TSASSVTTTS EGGCGDQTAA
201: EKPAILNLFV

Best Arabidopsis Sequence Match ( AT3G49940.1 )
(BLAST)

001: MSCNGCRVLR KGCSENCILR PCIQWIESPE AQGHATVFVA KFFGRAGLMS FISAVPESQC PALFQSLLYE ACGRTVNPVN GAVGLLWTGN WNVCQAAVET
101: VLRGGSLKPI PELLNGGGFA GFPSPTSDEA SEICTEMLNL RKADDSGDRN IYHHCRFSSS RSRSRSTASP PKRKRLSSEQ QPSSELDLSL IPIYPIKTLP
201: FKEDTPSMYS EESVTTVSFQ NNNAGDRYVR CGGGGGGATT KLLNLFA

Arabidopsis Description

LBD38LOB domain-containing protein 38 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN23]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.