Factsheet for VIT_03s0091g00670.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P18860_001	Banana	cytosol	53.33	54.74
KRH35680	Soybean	cytosol, mitochondrion, nucleus	45.64	52.05
KRG91097	Soybean	mitochondrion, nucleus, plasma membrane	45.64	52.05
GSMUA_Achr6P07770_001	Banana	mitochondrion	48.21	51.09
PGSC0003DMT400066165	Potato	mitochondrion, nucleus	56.41	50.69
Solyc01g107190.2.1	Tomato	mitochondrion, nucleus	55.9	50.23
VIT_07s0129g00330.t01	Wine grape	nucleus	56.92	48.68
GSMUA_Achr3P30130_001	Banana	nucleus	51.79	48.56
GSMUA_Achr7P26260_001	Banana	mitochondrion	51.28	47.17
GSMUA_Achr4P14150_001	Banana	mitochondrion	51.79	46.76
VIT_18s0001g09250.t01	Wine grape	nucleus	51.28	45.05
GSMUA_Achr2P13440_001	Banana	mitochondrion, nucleus, plastid	45.64	42.58
GSMUA_Achr4P32550_001	Banana	mitochondrion	44.62	41.43
HORVU4Hr1G013380.2	Barley	nucleus	43.59	37.28
TraesCS4B01G078800.1	Wheat	nucleus	43.59	36.96
Os03t0609500-01	Rice	cytosol, nucleus, plastid	43.59	36.64
TraesCS4D01G077600.1	Wheat	mitochondrion, nucleus, plastid	43.08	36.52
TraesCS4A01G236200.1	Wheat	mitochondrion, nucleus, plastid	43.59	36.48
KXG38039	Sorghum	mitochondrion, nucleus, plastid	42.56	33.6
Zm00001d033347_P001	Maize	mitochondrion, nucleus, plastid	42.56	33.07
VIT_01s0011g03540.t01	Wine grape	nucleus	39.49	30.43
VIT_14s0006g02950.t01	Wine grape	mitochondrion	43.59	30.04
VIT_01s0011g03530.t01	Wine grape	cytosol, nucleus, plastid	36.41	29.46
VIT_17s0000g03720.t01	Wine grape	mitochondrion, nucleus, plastid	39.49	28.31

Protein Annotations

EntrezGene:100265159	wikigene:100265159	MapMan:15.5.24	EMBL:AM430297	ProteinID:CAN66910	ProteinID:CAN66910.1
ProteinID:CCB47707	ProteinID:CCB47707.1	UniProt:F6H665	EMBL:FN595242	InterPro:IPR004883	InterPro:LOB
EntrezGene:LOC100265159	wikigene:LOC100265159	PFAM:PF03195	PFscan:PS50891	PANTHER:PTHR31304	PANTHER:PTHR31304:SF1
UniParc:UPI00015CD10B	ArrayExpress:VIT_03s0091g00670	EnsemblPlantsGene:VIT_03s0091g00670	EnsemblPlants:VIT_03s0091g00670.t01	RefSeq:XP_002264010	RefSeq:XP_002264010.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr3:-:7099015..7099742

Molecular Weight (calculated)

21641.7 Da

IEP (calculated)

4.525

GRAVY (calculated)

-0.222

Length

195 amino acids

Sequence
(BLAST)

001: MSCSGCRVLR KGCSENCMLR QCLEWIDSPE AQANATIFVA KFFGRADLMA FISTVPERQR PCLFQSLLFE ACGRTVNPVF GAVGLLWTGN WHVCQSAVET
101: VLRGGELAPL PEFLDLEGVE TPVSEAYLAE EYLSKPGDTD YRLTDVNLRP KHGSATGMKI EETEERRPRT SPDDSATMTW ENALGDEGNA LRLFL

Best Arabidopsis Sequence Match ( AT3G49940.1 )
(BLAST)

001: MSCNGCRVLR KGCSENCILR PCIQWIESPE AQGHATVFVA KFFGRAGLMS FISAVPESQC PALFQSLLYE ACGRTVNPVN GAVGLLWTGN WNVCQAAVET
101: VLRGGSLKPI PELLNGGGFA GFPSPTSDEA SEICTEMLNL RKADDSGDRN IYHHCRFSSS RSRSRSTASP PKRKRLSSEQ QPSSELDLSL IPIYPIKTLP
201: FKEDTPSMYS EESVTTVSFQ NNNAGDRYVR CGGGGGGATT KLLNLFA

Arabidopsis Description

LBD38LOB domain-containing protein 38 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN23]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.