Factsheet for Zm00001d033347_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus

Predictor Summary:

mitochondrion 3
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, nucleus, plastid
Any Predictor:	mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU4Hr1G013380.2	Barley	nucleus	67.33	74.12
TraesCS4D01G077600.1	Wheat	mitochondrion, nucleus, plastid	67.33	73.48
KXG38039	Sorghum	mitochondrion, nucleus, plastid	72.11	73.28
TraesCS4B01G078800.1	Wheat	nucleus	66.93	73.04
Os03t0609500-01	Rice	cytosol, nucleus, plastid	66.93	72.41
TraesCS4A01G236200.1	Wheat	mitochondrion, nucleus, plastid	66.53	71.67
KRH05602	Soybean	nucleus	13.94	57.38
GSMUA_Achr2P13440_001	Banana	mitochondrion, nucleus, plastid	42.63	51.2
Zm00001d029602_P001	Maize	cytosol, mitochondrion, nucleus, plastid	41.83	48.39
Zm00001d021995_P001	Maize	cytosol, mitochondrion, nucleus, plastid	40.64	47.44
KRG91097	Soybean	mitochondrion, nucleus, plasma membrane	32.27	47.37
KRH35680	Soybean	cytosol, mitochondrion, nucleus	32.27	47.37
Zm00001d006739_P001	Maize	cytosol, mitochondrion, nucleus, plastid	39.04	46.23
GSMUA_Achr4P32550_001	Banana	mitochondrion	38.65	46.19
CDY37852	Canola	nucleus	39.84	46.08
CDY58550	Canola	nucleus	39.84	46.08
PGSC0003DMT400064185	Potato	nucleus	38.65	45.75
Solyc02g092550.2.1	Tomato	extracellular	39.04	44.95
CDY67844	Canola	nucleus	40.64	44.93
CDY43575	Canola	nucleus	39.44	44.8
VIT_07s0129g00330.t01	Wine grape	nucleus	40.64	44.74
CDY67455	Canola	nucleus	40.64	44.74
KRH15442	Soybean	mitochondrion, nucleus	30.28	44.44
CDY17741	Canola	nucleus	38.65	44.29
KRH58049	Soybean	mitochondrion, nucleus	38.65	42.73
VIT_03s0091g00670.t01	Wine grape	cytosol	33.07	42.56
PGSC0003DMT400066165	Potato	mitochondrion, nucleus	36.65	42.4
Bra037847.1-P	Field mustard	nucleus	39.84	42.37
CDX81315	Canola	nucleus	39.84	42.37
KRH04451	Soybean	nucleus	38.65	42.17
KRH61393	Soybean	nucleus	31.08	42.16
Solyc01g107190.2.1	Tomato	mitochondrion, nucleus	36.26	41.94
Bra031833.1-P	Field mustard	nucleus	40.24	41.91
CDX69315	Canola	nucleus	37.05	41.7
CDY23026	Canola	nucleus	39.44	41.25
Bra012913.1-P	Field mustard	nucleus	39.04	40.66
AT5G67420.2	Thale cress	nucleus	40.24	40.4
CDY02101	Canola	nucleus	38.65	40.25
Bra036040.1-P	Field mustard	nucleus	39.04	40.0
KRH28374	Soybean	nucleus	38.25	40.0
Bra012164.1-P	Field mustard	nucleus	40.64	39.84
Bra011772.1-P	Field mustard	nucleus	37.45	39.66
CDX75662	Canola	nucleus	37.45	39.66
AT3G49940.1	Thale cress	nucleus	38.65	39.27
Bra017831.1-P	Field mustard	nucleus	36.26	39.22
CDY29564	Canola	nucleus	36.26	39.22
PGSC0003DMT400055393	Potato	nucleus	31.87	39.22
Solyc04g077990.2.1	Tomato	nucleus, plasma membrane, plastid	31.87	39.22
KRH77108	Soybean	nucleus	37.85	39.09
AT4G37540.1	Thale cress	nucleus	37.05	38.75
VIT_18s0001g09250.t01	Wine grape	nucleus	34.26	38.74
CDX72636	Canola	mitochondrion, nucleus	35.46	38.36
CDX81265	Canola	nucleus	35.86	37.82
KRH05603	Soybean	cytosol, extracellular	13.55	32.08
Zm00001d040004_P001	Maize	mitochondrion	33.86	28.52
Zm00001d010751_P001	Maize	cytosol, mitochondrion, nucleus	33.86	27.16
Zm00001d010749_P001	Maize	plastid	30.28	26.86
Zm00001d038717_P001	Maize	cytosol, mitochondrion, nucleus	33.86	26.56
Zm00001d029506_P001	Maize	cytosol, mitochondrion, nucleus, plastid	31.47	25.24
Zm00001d029601_P003	Maize	cytosol	29.88	22.8

Protein Annotations

EnsemblPlants:Zm00001d033347_P001	EnsemblPlants:Zm00001d033347_T001	EnsemblPlantsGene:Zm00001d033347	EntrezGene:103643744	InterPro:IPR004883	InterPro:LOB
PANTHER:PTHR31304	PANTHER:PTHR31304:SF2	PFAM:PF03195	PFscan:PS50891	ProteinID:ONM07284.1	SEG:seg
UniParc:UPI00022153CC	UniProt:A0A1D6KXW5	MapMan:15.5.24	:	:	:

Description

LBD-transcription factor 11LOB domain-containing protein 38

Coordinates

chr1:+:259828724..259831189

Molecular Weight (calculated)

25555.1 Da

IEP (calculated)

7.696

GRAVY (calculated)

-0.037

Length

251 amino acids

Sequence
(BLAST)

001: MSCNGCRVLR KGCSDACVLR PSIDWIHGAQ PQANATVFVA KFFGRAGLVA SLAAVPLHHR PALFRSLLYE ACGRTINPVS GAIGLMWTGN WDLCQAAADA
101: VLRGESLRAL SAVPAAFTDR DMDGLYGSVG GLVAAAAAAA SPENSSSSAP STTKRRNANG GSSNNAVPAA AASHHRPPPP AAAAAGLLLQ SSCHQLDLCL
201: TPALSPPGAG PRGCAAGASD EYSATTTCED QTGDHGHGEP RPPPPLLNLF N

Best Arabidopsis Sequence Match ( AT1G67100.1 )
(BLAST)

001: MRMSCNGCRV LRKGCSENCS IRPCLQWIKS AESQANATVF LAKFYGRAGL MNLLNTGPDH LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GNWHLCQAAV
101: EAVMRGSPVT PIACDAAVTG QAPPFNNKLC DIRHVSSRDE NVKRRSRGAC KEERNVRSLS HESSLSHESP VSSEETTTEE PKTWIGLELT LGLEPLARGN
201: HVVVPMKKRK LERCGTSEDE DTCKIELGLV CSE

Arabidopsis Description

LBD40LOB domain-containing protein 40 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZW96]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.