Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 2
- plastid 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os03t0445700-01 | Rice | cytosol, mitochondrion, plastid | 73.73 | 78.43 |
| EER92081 | Sorghum | cytosol, mitochondrion, nucleus, plastid | 81.57 | 75.32 |
| Zm00001d021995_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 69.12 | 69.77 |
| Zm00001d006739_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 63.13 | 64.62 |
| Zm00001d033347_P001 | Maize | mitochondrion, nucleus, plastid | 48.39 | 41.83 |
| Zm00001d040004_P001 | Maize | mitochondrion | 41.01 | 29.87 |
| Zm00001d029601_P003 | Maize | cytosol | 45.16 | 29.79 |
| Zm00001d010749_P001 | Maize | plastid | 36.41 | 27.92 |
| Zm00001d038717_P001 | Maize | cytosol, mitochondrion, nucleus | 40.09 | 27.19 |
| Zm00001d010751_P001 | Maize | cytosol, mitochondrion, nucleus | 39.17 | 27.16 |
| Zm00001d029506_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 37.79 | 26.2 |
Protein Annotations
| EnsemblPlants:Zm00001d029602_P001 | EnsemblPlants:Zm00001d029602_T001 | EnsemblPlantsGene:Zm00001d029602 | InterPro:IPR004883 | InterPro:LOB | PANTHER:PTHR31304 |
| PANTHER:PTHR31304:SF1 | PFAM:PF03195 | PFscan:PS50891 | ProteinID:ONL99075.1 | ProteinID:ONL99077.1 | SEG:seg |
| UniParc:UPI000222085D | UniProt:A0A1D6K680 | MapMan:15.5.24 | : | : | : |
Description
LBD-transcription factor 6LOB domain-containing protein 38
Coordinates
chr1:-:78655181..78656079
Molecular Weight (calculated)
22070.4 Da
IEP (calculated)
8.408
GRAVY (calculated)
0.076
Length
217 amino acids
Sequence
(BLAST)
(BLAST)
001: MSCNGCRVLR KGCSEACVLR PCLQWIDAAE AQGHATVFVA KFFGRAGLLS FISAVPDAQR PALFQSLLYE AAGRTINPVH GAVGLLGTGN WHLCQAAVDT
101: VLRGGAIGPL PELGAGTGHL YGPPAATDKR AGGWSTFSTA KRARKAAAGA GAPPAAEAAA YCDLGLCLSS SPGSPPATAD GRRAPLLRPG TPSMSSDESV
201: TTTAGGDREP VLLNLFA
101: VLRGGAIGPL PELGAGTGHL YGPPAATDKR AGGWSTFSTA KRARKAAAGA GAPPAAEAAA YCDLGLCLSS SPGSPPATAD GRRAPLLRPG TPSMSSDESV
201: TTTAGGDREP VLLNLFA
001: MSCNGCRVLR KGCSENCILR PCIQWIETAD AQGHATVFVA KFFGRAGLMS FISAVPDSQR PALFQSLLYE ACGRTVNPVN GAIGMLWTGN WNICQAAVET
101: VLRGGSLRPI PELLTHGGGF AGFPSPTSEE ASEICTEMLN LQQNDSTDRN IYHHSRFSSS RSRSTMDSSS PTKRKRLSSE DQPSSELDLS LIPNFPIKQA
201: TPSSTRRRSV TPSMNSEDSG TTTTTTAFCD KGDVYGNGGG ETTKLLNLFV
101: VLRGGSLRPI PELLTHGGGF AGFPSPTSEE ASEICTEMLN LQQNDSTDRN IYHHSRFSSS RSRSTMDSSS PTKRKRLSSE DQPSSELDLS LIPNFPIKQA
201: TPSSTRRRSV TPSMNSEDSG TTTTTTAFCD KGDVYGNGGG ETTKLLNLFV
Arabidopsis Description
LBD37LOB domain-containing protein 37 [Source:UniProtKB/Swiss-Prot;Acc:Q9FN11]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.