Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- cytosol 1
- plastid 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER97470 | Sorghum | cytosol, nucleus, plastid | 82.08 | 81.31 |
| Zm00001d021995_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 76.42 | 75.35 |
| Os07t0589000-01 | Rice | cytosol, mitochondrion, nucleus, plastid | 68.87 | 64.6 |
| TraesCS2B01G212400.1 | Wheat | plastid | 70.75 | 63.29 |
| TraesCS2A01G194500.1 | Wheat | cytosol, nucleus, plastid | 69.81 | 63.25 |
| Zm00001d029602_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 64.62 | 63.13 |
| HORVU2Hr1G035160.1 | Barley | endoplasmic reticulum, nucleus, plastid | 70.28 | 53.79 |
| Zm00001d033347_P001 | Maize | mitochondrion, nucleus, plastid | 46.23 | 39.04 |
| Zm00001d040004_P001 | Maize | mitochondrion | 41.51 | 29.53 |
| Zm00001d029601_P003 | Maize | cytosol | 43.87 | 28.27 |
| Zm00001d038717_P001 | Maize | cytosol, mitochondrion, nucleus | 41.51 | 27.5 |
| Zm00001d010751_P001 | Maize | cytosol, mitochondrion, nucleus | 39.62 | 26.84 |
| Zm00001d010749_P001 | Maize | plastid | 34.91 | 26.15 |
| Zm00001d029506_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 38.21 | 25.88 |
Protein Annotations
| EnsemblPlants:Zm00001d006739_P001 | EnsemblPlants:Zm00001d006739_T001 | EnsemblPlantsGene:Zm00001d006739 | InterPro:IPR004883 | InterPro:LOB | PANTHER:PTHR31304 |
| PANTHER:PTHR31304:SF1 | PFAM:PF03195 | PFscan:PS50891 | ProteinID:ONM24902.1 | SEG:seg | UniParc:UPI000221F9AB |
| UniProt:A0A1D6F053 | MapMan:15.5.24 | : | : | : | : |
Description
LBD-transcription factor 14Seed specific protein Bn15D17A
Coordinates
chr2:+:215644201..215645366
Molecular Weight (calculated)
21649.9 Da
IEP (calculated)
8.722
GRAVY (calculated)
-0.096
Length
212 amino acids
Sequence
(BLAST)
(BLAST)
001: MSCNGCRMLR KGCSDACVLR PSLQWIDGGA EAQGHATAFV AKFFGRAGLM SLLTAVPEPQ RPAVFQSLLY EAAGRTIDPV SGAVGLLGAG SWHLCQAAVE
101: TVLRGGAIAP LPESDSDGAR RGASAVAARR AVGCSTFSTA KRAPASVGAP PEPSCDLGLW LSPGSPPATG ERRRRRRPGT PSMTSEESVT TMSGGGGGGG
201: GGREPELLNL FV
101: TVLRGGAIAP LPESDSDGAR RGASAVAARR AVGCSTFSTA KRAPASVGAP PEPSCDLGLW LSPGSPPATG ERRRRRRPGT PSMTSEESVT TMSGGGGGGG
201: GGREPELLNL FV
001: MSCNGCRVLR KGCSENCILR PCIQWIESPE AQGHATVFVA KFFGRAGLMS FISAVPESQC PALFQSLLYE ACGRTVNPVN GAVGLLWTGN WNVCQAAVET
101: VLRGGSLKPI PELLNGGGFA GFPSPTSDEA SEICTEMLNL RKADDSGDRN IYHHCRFSSS RSRSRSTASP PKRKRLSSEQ QPSSELDLSL IPIYPIKTLP
201: FKEDTPSMYS EESVTTVSFQ NNNAGDRYVR CGGGGGGATT KLLNLFA
101: VLRGGSLKPI PELLNGGGFA GFPSPTSDEA SEICTEMLNL RKADDSGDRN IYHHCRFSSS RSRSRSTASP PKRKRLSSEQ QPSSELDLSL IPIYPIKTLP
201: FKEDTPSMYS EESVTTVSFQ NNNAGDRYVR CGGGGGGATT KLLNLFA
Arabidopsis Description
LBD38LOB domain-containing protein 38 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN23]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.