Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G193400.1 | Wheat | cytosol, nucleus, plastid | 37.39 | 50.62 |
| Zm00001d029602_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 29.79 | 45.16 |
| Zm00001d021995_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 29.18 | 44.65 |
| Zm00001d006739_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 28.27 | 43.87 |
| Zm00001d033347_P001 | Maize | mitochondrion, nucleus, plastid | 22.8 | 29.88 |
| Zm00001d010749_P001 | Maize | plastid | 21.28 | 24.73 |
| Zm00001d040004_P001 | Maize | mitochondrion | 22.19 | 24.5 |
| Zm00001d038717_P001 | Maize | cytosol, mitochondrion, nucleus | 23.71 | 24.38 |
| Zm00001d010751_P001 | Maize | cytosol, mitochondrion, nucleus | 22.19 | 23.32 |
| Zm00001d029506_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 20.36 | 21.41 |
Protein Annotations
| EMBL:BT035385 | EMBL:KJ727632 | EnsemblPlants:Zm00001d029601_P003 | EnsemblPlants:Zm00001d029601_T003 | EnsemblPlantsGene:Zm00001d029601 | EntrezGene:100193187 |
| InterPro:IPR004883 | InterPro:LOB | PANTHER:PTHR31304 | PANTHER:PTHR31304:SF1 | PFAM:PF03195 | PFscan:PS50891 |
| ProteinID:ONL99076.1 | SEG:seg | UniParc:UPI00017B676F | UniProt:B4FE47 | MapMan:15.5.24 | : |
Description
LOB domain-containing protein 38
Coordinates
chr1:-:78654675..78656117
Molecular Weight (calculated)
36069.5 Da
IEP (calculated)
12.241
GRAVY (calculated)
-0.661
Length
329 amino acids
Sequence
(BLAST)
(BLAST)
001: MSCNGCRVLR KGCSEACVLR PCLQWIDAAE AQGHATVFVA KFFGRAGLLS FISAVPDAQR PAYYCLPGLL WSMAPPRSPV PVAAVRGGGA DHQPGARRGG
101: AAGHGELAPL PGRRRHRAAG RRHRPAAGAW RRDGPPVRAP RRHRQARRRL VHLLHGEAGA EGRRRCRGAA RGGGGGVLRP RAVPQQQPRV PAGDGGREEG
201: PPPAARHAVH ELGRVRHDHG RRRQGARAAQ PFCLMKPPVD DAGQTKPNHT RSGSLDWPPC DVMFCLDDLS RRPGVFSRRR RRQGRFSFVS GCGLRFYFWL
301: RSSGSRKETT SSSRSRPRSP VCVWAKMRL
101: AAGHGELAPL PGRRRHRAAG RRHRPAAGAW RRDGPPVRAP RRHRQARRRL VHLLHGEAGA EGRRRCRGAA RGGGGGVLRP RAVPQQQPRV PAGDGGREEG
201: PPPAARHAVH ELGRVRHDHG RRRQGARAAQ PFCLMKPPVD DAGQTKPNHT RSGSLDWPPC DVMFCLDDLS RRPGVFSRRR RRQGRFSFVS GCGLRFYFWL
301: RSSGSRKETT SSSRSRPRSP VCVWAKMRL
001: MSCNGCRVLR KGCSENCILR PCIQWIETAD AQGHATVFVA KFFGRAGLMS FISAVPDSQR PALFQSLLYE ACGRTVNPVN GAIGMLWTGN WNICQAAVET
101: VLRGGSLRPI PELLTHGGGF AGFPSPTSEE ASEICTEMLN LQQNDSTDRN IYHHSRFSSS RSRSTMDSSS PTKRKRLSSE DQPSSELDLS LIPNFPIKQA
201: TPSSTRRRSV TPSMNSEDSG TTTTTTAFCD KGDVYGNGGG ETTKLLNLFV
101: VLRGGSLRPI PELLTHGGGF AGFPSPTSEE ASEICTEMLN LQQNDSTDRN IYHHSRFSSS RSRSTMDSSS PTKRKRLSSE DQPSSELDLS LIPNFPIKQA
201: TPSSTRRRSV TPSMNSEDSG TTTTTTAFCD KGDVYGNGGG ETTKLLNLFV
Arabidopsis Description
LBD37LOB domain-containing protein 37 [Source:UniProtKB/Swiss-Prot;Acc:Q9FN11]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.