Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 2
- plastid 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os07t0589000-01 | Rice | cytosol, mitochondrion, nucleus, plastid | 80.47 | 76.55 |
| Zm00001d006739_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 75.35 | 76.42 |
| Zm00001d029602_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 69.77 | 69.12 |
| TraesCS2A01G194500.1 | Wheat | cytosol, nucleus, plastid | 66.98 | 61.54 |
| TraesCS2B01G212400.1 | Wheat | plastid | 66.98 | 60.76 |
| HORVU2Hr1G035160.1 | Barley | endoplasmic reticulum, nucleus, plastid | 66.98 | 51.99 |
| Zm00001d033347_P001 | Maize | mitochondrion, nucleus, plastid | 47.44 | 40.64 |
| Zm00001d040004_P001 | Maize | mitochondrion | 40.47 | 29.19 |
| Zm00001d029601_P003 | Maize | cytosol | 44.65 | 29.18 |
| Zm00001d038717_P001 | Maize | cytosol, mitochondrion, nucleus | 41.4 | 27.81 |
| Zm00001d010751_P001 | Maize | cytosol, mitochondrion, nucleus | 39.07 | 26.84 |
| Zm00001d029506_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 39.07 | 26.84 |
| Zm00001d010749_P001 | Maize | plastid | 34.88 | 26.5 |
Protein Annotations
| EnsemblPlants:Zm00001d021995_P001 | EnsemblPlants:Zm00001d021995_T001 | EnsemblPlantsGene:Zm00001d021995 | InterPro:IPR004883 | InterPro:LOB | PANTHER:PTHR31304 |
| PANTHER:PTHR31304:SF1 | PFAM:PF03195 | PFscan:PS50891 | ProteinID:ONM59232.1 | SEG:seg | UniParc:UPI000843BD45 |
| UniProt:A0A1D6IIB9 | MapMan:15.5.24 | : | : | : | : |
Description
LOB domain-containing protein 38
Coordinates
chr7:+:167680342..167681551
Molecular Weight (calculated)
22176.6 Da
IEP (calculated)
8.505
GRAVY (calculated)
-0.054
Length
215 amino acids
Sequence
(BLAST)
(BLAST)
001: MSCNGCRVLR KGCSDACVLR PCLQWIDGAE AQGHATVFVA KFFGRAGLMS FLTAVPEPQR PAVFQSLMYE AAGRTINPVS GAVGLLGAGS WQLCQAAVET
101: VLRGGAIGPL PEFDGGRDNT FALAATARRA VGCSTFSTAK RGAPTRANVG AAPPVPPEPS CDLGLWLSPG SCPAPGERRR RRPGTPSMTS EESVTTTSGG
201: GGGGGREPEL LNLFV
101: VLRGGAIGPL PEFDGGRDNT FALAATARRA VGCSTFSTAK RGAPTRANVG AAPPVPPEPS CDLGLWLSPG SCPAPGERRR RRPGTPSMTS EESVTTTSGG
201: GGGGGREPEL LNLFV
001: MSCNGCRVLR KGCSENCILR PCIQWIETAD AQGHATVFVA KFFGRAGLMS FISAVPDSQR PALFQSLLYE ACGRTVNPVN GAIGMLWTGN WNICQAAVET
101: VLRGGSLRPI PELLTHGGGF AGFPSPTSEE ASEICTEMLN LQQNDSTDRN IYHHSRFSSS RSRSTMDSSS PTKRKRLSSE DQPSSELDLS LIPNFPIKQA
201: TPSSTRRRSV TPSMNSEDSG TTTTTTAFCD KGDVYGNGGG ETTKLLNLFV
101: VLRGGSLRPI PELLTHGGGF AGFPSPTSEE ASEICTEMLN LQQNDSTDRN IYHHSRFSSS RSRSTMDSSS PTKRKRLSSE DQPSSELDLS LIPNFPIKQA
201: TPSSTRRRSV TPSMNSEDSG TTTTTTAFCD KGDVYGNGGG ETTKLLNLFV
Arabidopsis Description
LBD37LOB domain-containing protein 37 [Source:UniProtKB/Swiss-Prot;Acc:Q9FN11]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.