Factsheet for Zm00001d029506_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:

mitochondrion 3
cytosol 1
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU92400	Sorghum	mitochondrion, nucleus, plastid	78.91	75.3
Os01t0511000-01	Rice	cytosol, nucleus, plastid	38.34	64.52
Zm00001d038717_P001	Maize	cytosol, mitochondrion, nucleus	52.72	51.56
Zm00001d010751_P001	Maize	cytosol, mitochondrion, nucleus	51.44	51.44
HORVU3Hr1G016320.1	Barley	cytosol, nucleus, plastid	45.69	50.71
TraesCS3B01G106900.1	Wheat	cytosol, mitochondrion, nucleus	46.33	49.15
TraesCS3D01G091700.1	Wheat	cytosol, nucleus, plastid	46.33	48.82
AT1G68510.1	Thale cress	mitochondrion, nucleus	35.14	47.21
Bra004315.1-P	Field mustard	mitochondrion	34.5	45.57
CDX96013	Canola	mitochondrion	34.5	45.57
TraesCS5A01G529400.1	Wheat	nucleus	38.98	45.52
CDY38588	Canola	cytosol, mitochondrion, nucleus	34.5	45.0
Zm00001d010749_P001	Maize	plastid	40.58	44.88
PGSC0003DMT400037711	Potato	mitochondrion	36.1	44.66
KRH45269	Soybean	nucleus	30.99	44.29
Solyc05g009320.2.1	Tomato	mitochondrion	35.78	44.09
TraesCS5A01G529300.1	Wheat	cytosol, nucleus, plastid	39.94	43.25
Zm00001d040004_P001	Maize	mitochondrion	40.89	42.95
KRG90816	Soybean	nucleus	30.35	42.41
VIT_01s0011g03530.t01	Wine grape	cytosol, nucleus, plastid	32.59	42.32
Zm00001d021995_P001	Maize	cytosol, mitochondrion, nucleus, plastid	26.84	39.07
Zm00001d006739_P001	Maize	cytosol, mitochondrion, nucleus, plastid	25.88	38.21
Zm00001d029602_P001	Maize	cytosol, mitochondrion, nucleus, plastid	26.2	37.79
Zm00001d033347_P001	Maize	mitochondrion, nucleus, plastid	25.24	31.47
Zm00001d029601_P003	Maize	cytosol	21.41	20.36

Protein Annotations

EMBL:EU954764	EnsemblPlants:Zm00001d029506_P001	EnsemblPlants:Zm00001d029506_T001	EnsemblPlantsGene:Zm00001d029506	EntrezGene:100275184	InterPro:IPR004883
InterPro:LOB	PANTHER:PTHR31304	PANTHER:PTHR31304:SF9	PFAM:PF03195	PFscan:PS50891	ProteinID:AIB05895.1
ProteinID:ONL98875.1	SEG:seg	UniParc:UPI000182B427	UniProt:B6SPU9	MapMan:15.5.24	:

Description

LBD-transcription factor 5LOB domain-containing protein 42

Coordinates

chr1:-:73706673..73707614

Molecular Weight (calculated)

33963.6 Da

IEP (calculated)

6.606

GRAVY (calculated)

-0.637

Length

313 amino acids

Sequence
(BLAST)

001: MRMSCNGCRV LRKGCSDACT IRPCLQWIKS PEAQANATVF LAKFYGRAGL LNLLAAPPAD HLRPAAFRSL LYEACGRIVN PVYGSVGLLW SGQWQACQAA
101: VEAVLKGDPI VQVQVDAASD ASPPLGPRRH DIRHVARDPA AAPDVLLRSS SRKRAASSST SSKHNQPGSS KRASLGKNRQ RAEQEPVPMV VEHGEESAGS
201: HDHDHDQHHR LQGSEEDTDV EAASHAHSHV SQAEPEPEPE TEPQSHAPPA CSQQQANQEH QDDEDEELAL ELTLGLEPLV RQRQRPKSSR SDCDHSGLSA
301: ASSLMCLRLQ LPA

Best Arabidopsis Sequence Match ( AT3G02550.1 )
(BLAST)

001: MRMSCNGCRV LRKGCSEDCS IRPCLAWIKS PEAQANATVF LAKFYGRAGL MNLINAGPNH LRPGIFRSLL HEACGRIVNP IYGSVGLLWS GNWQLCQDAV
101: EAVMKGEPVK EIATDAATIG QGPPLKIYDI RHISKDDNSA AAATGSTDLK LAKTRRAKRV STVAIQAESE GKSDEASHDS SLSHQSEIVA AHEGESKESE
201: SNVSEVLAFS PPAVKGSGEI KLDLTLRLEP VSRAYHVVPV KKRRIGVFGT CQKESTCKTE LML

Arabidopsis Description

LBD41LOB domain-containing protein 41 [Source:UniProtKB/Swiss-Prot;Acc:Q9M886]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.