Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- cytosol 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G091700.1 | Wheat | cytosol, nucleus, plastid | 91.53 | 90.91 |
| HORVU3Hr1G016320.1 | Barley | cytosol, nucleus, plastid | 84.41 | 88.3 |
| TraesCS4B01G361200.1 | Wheat | nucleus | 57.63 | 61.37 |
| TraesCS4B01G361100.1 | Wheat | cytosol, nucleus, plastid | 58.31 | 58.7 |
| Os01t0511000-01 | Rice | cytosol, nucleus, plastid | 36.95 | 58.6 |
| Zm00001d010751_P001 | Maize | cytosol, mitochondrion, nucleus | 54.24 | 51.12 |
| Zm00001d038717_P001 | Maize | cytosol, mitochondrion, nucleus | 54.58 | 50.31 |
| AT1G68510.1 | Thale cress | mitochondrion, nucleus | 39.32 | 49.79 |
| KRH45269 | Soybean | nucleus | 35.93 | 48.4 |
| TraesCS2B01G289800.1 | Wheat | nucleus | 49.49 | 48.34 |
| Bra004315.1-P | Field mustard | mitochondrion | 38.64 | 48.1 |
| CDX96013 | Canola | mitochondrion | 38.64 | 48.1 |
| CDY38588 | Canola | cytosol, mitochondrion, nucleus | 38.98 | 47.92 |
| KRG90816 | Soybean | nucleus | 35.93 | 47.32 |
| VIT_01s0011g03530.t01 | Wine grape | cytosol, nucleus, plastid | 37.97 | 46.47 |
| Zm00001d029506_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 49.15 | 46.33 |
| PGSC0003DMT400037711 | Potato | mitochondrion | 39.66 | 46.25 |
| OQU92400 | Sorghum | mitochondrion, nucleus, plastid | 51.19 | 46.04 |
| Solyc05g009320.2.1 | Tomato | mitochondrion | 39.32 | 45.67 |
| Zm00001d010749_P001 | Maize | plastid | 43.39 | 45.23 |
| KXG22356 | Sorghum | plastid | 47.46 | 42.17 |
| TraesCS2B01G212400.1 | Wheat | plastid | 29.15 | 36.29 |
| TraesCS4B01G078800.1 | Wheat | nucleus | 27.8 | 35.65 |
Protein Annotations
| EnsemblPlants:TraesCS3B01G106900.1 | EnsemblPlantsGene:TraesCS3B01G106900 | InterPro:IPR004883 | InterPro:LOB | PANTHER:PTHR31304 | PANTHER:PTHR31304:SF9 |
| PFAM:PF03195 | PFscan:PS50891 | SEG:seg | MapMan:15.5.24 | : | : |
Description
No Description!
Coordinates
chr3B:-:72477250..72478137
Molecular Weight (calculated)
30820.2 Da
IEP (calculated)
6.418
GRAVY (calculated)
-0.246
Length
295 amino acids
Sequence
(BLAST)
(BLAST)
001: MRMSCNGCRV LRKGCGEGCT IRPCLEWIRS ADAQANATVF LAKFYGRAGL LNLLAADGPG LRPALFRSLL YEACGRMVNP VYGSVGLLWS GQWEACQAAV
101: EAVLKGRPIV RVTSDAPLAA CDIRHVAKAD RPAASPEAAA AAGTVLGVSR AGRTGFKRAS SSTAKPKSKS FSGAKHDGGL DQAPSHEESA GSHDHGSHVE
201: DDGMAVEQAR EEESSEGTDV DAGSHVSQAE RSPVPPVAQD EEAHDDEIGL ELTLGFQQVT PRVVARSPPA GARFGASSSS AESRHIGLLL ELPVA
101: EAVLKGRPIV RVTSDAPLAA CDIRHVAKAD RPAASPEAAA AAGTVLGVSR AGRTGFKRAS SSTAKPKSKS FSGAKHDGGL DQAPSHEESA GSHDHGSHVE
201: DDGMAVEQAR EEESSEGTDV DAGSHVSQAE RSPVPPVAQD EEAHDDEIGL ELTLGFQQVT PRVVARSPPA GARFGASSSS AESRHIGLLL ELPVA
001: MRMSCNGCRV LRKGCSEDCS IRPCLAWIKS PEAQANATVF LAKFYGRAGL MNLINAGPNH LRPGIFRSLL HEACGRIVNP IYGSVGLLWS GNWQLCQDAV
101: EAVMKGEPVK EIATDAATIG QGPPLKIYDI RHISKDDNSA AAATGSTDLK LAKTRRAKRV STVAIQAESE GKSDEASHDS SLSHQSEIVA AHEGESKESE
201: SNVSEVLAFS PPAVKGSGEI KLDLTLRLEP VSRAYHVVPV KKRRIGVFGT CQKESTCKTE LML
101: EAVMKGEPVK EIATDAATIG QGPPLKIYDI RHISKDDNSA AAATGSTDLK LAKTRRAKRV STVAIQAESE GKSDEASHDS SLSHQSEIVA AHEGESKESE
201: SNVSEVLAFS PPAVKGSGEI KLDLTLRLEP VSRAYHVVPV KKRRIGVFGT CQKESTCKTE LML
Arabidopsis Description
LBD41LOB domain-containing protein 41 [Source:UniProtKB/Swiss-Prot;Acc:Q9M886]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.