Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- cytosol 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G354200.1 | Wheat | nucleus | 90.61 | 91.27 |
| TraesCS5A01G529400.1 | Wheat | nucleus | 86.64 | 89.55 |
| TraesCS4B01G361100.1 | Wheat | cytosol, nucleus, plastid | 70.4 | 66.55 |
| TraesCS3B01G106900.1 | Wheat | cytosol, mitochondrion, nucleus | 61.37 | 57.63 |
| KRH45269 | Soybean | nucleus | 36.82 | 46.58 |
| AT1G68510.1 | Thale cress | mitochondrion, nucleus | 36.82 | 43.78 |
| TraesCS2B01G289800.1 | Wheat | nucleus | 47.29 | 43.38 |
| KRG90816 | Soybean | nucleus | 34.66 | 42.86 |
| Bra004315.1-P | Field mustard | mitochondrion | 35.02 | 40.93 |
| CDX96013 | Canola | mitochondrion | 35.02 | 40.93 |
| CDY38588 | Canola | cytosol, mitochondrion, nucleus | 35.38 | 40.83 |
| PGSC0003DMT400037711 | Potato | mitochondrion | 37.18 | 40.71 |
| Solyc05g009320.2.1 | Tomato | mitochondrion | 36.82 | 40.16 |
| VIT_01s0011g03530.t01 | Wine grape | cytosol, nucleus, plastid | 33.57 | 38.59 |
| TraesCS2B01G212400.1 | Wheat | plastid | 29.6 | 34.6 |
| TraesCS4B01G078800.1 | Wheat | nucleus | 28.52 | 34.35 |
Protein Annotations
| EnsemblPlants:TraesCS4B01G361200.1 | EnsemblPlantsGene:TraesCS4B01G361200 | InterPro:IPR004883 | InterPro:LOB | PANTHER:PTHR31304 | PANTHER:PTHR31304:SF9 |
| PFAM:PF03195 | PFscan:PS50891 | SEG:seg | MapMan:15.5.24 | : | : |
Description
No Description!
Coordinates
chr4B:-:650705778..650707007
Molecular Weight (calculated)
28693.5 Da
IEP (calculated)
7.788
GRAVY (calculated)
-0.234
Length
277 amino acids
Sequence
(BLAST)
(BLAST)
001: MRASCNGCRV LRKGCADDCT IRPCLAWIRS PDAQANATVF LAKFYGRAGL INLLAAAPDD ARRPALFRSL LYEACGRAAS PVYGASGLFS TGNWEACQAA
101: VQAVLEGRRI PQVAADQAAP HPGLLAAYGV RRIPKDGIDR ASAALRVSPA GRASFKRASS SSSSAARSKR DGGHEEASAG SSHDHGVEDD GKALAAEQKR
201: GQSSSSEAEA GSHVSQAEQS ASATVPQVAE DDGEIDLELT LGFGPATRVL RSPPARFEAS SLSAESGHIG LLLGLPV
101: VQAVLEGRRI PQVAADQAAP HPGLLAAYGV RRIPKDGIDR ASAALRVSPA GRASFKRASS SSSSAARSKR DGGHEEASAG SSHDHGVEDD GKALAAEQKR
201: GQSSSSEAEA GSHVSQAEQS ASATVPQVAE DDGEIDLELT LGFGPATRVL RSPPARFEAS SLSAESGHIG LLLGLPV
001: MRMSCNGCRV LRKGCSENCS IRPCLQWIKS AESQANATVF LAKFYGRAGL MNLLNTGPDH LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GNWHLCQAAV
101: EAVMRGSPVT PIACDAAVTG QAPPFNNKLC DIRHVSSRDE NVKRRSRGAC KEERNVRSLS HESSLSHESP VSSEETTTEE PKTWIGLELT LGLEPLARGN
201: HVVVPMKKRK LERCGTSEDE DTCKIELGLV CSE
101: EAVMRGSPVT PIACDAAVTG QAPPFNNKLC DIRHVSSRDE NVKRRSRGAC KEERNVRSLS HESSLSHESP VSSEETTTEE PKTWIGLELT LGLEPLARGN
201: HVVVPMKKRK LERCGTSEDE DTCKIELGLV CSE
Arabidopsis Description
LBD40LOB domain-containing protein 40 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZW96]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.