Factsheet for Solyc05g009320.2.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 4
mitochondrion 4
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400037711	Potato	mitochondrion	91.34	91.7
GSMUA_Achr2P22720_001	Banana	cytosol, mitochondrion, nucleus	28.74	80.22
Os01t0511000-01	Rice	cytosol, nucleus, plastid	35.83	48.92
Solyc03g119530.2.1	Tomato	cytosol, nucleus, plastid	47.24	48.58
AT1G68510.1	Thale cress	mitochondrion, nucleus	44.49	48.5
GSMUA_Achr9P00580_001	Banana	mitochondrion	43.7	47.44
CDY38588	Canola	cytosol, mitochondrion, nucleus	43.31	45.83
Bra004315.1-P	Field mustard	mitochondrion	42.52	45.57
CDX96013	Canola	mitochondrion	42.52	45.57
Solyc02g085910.2.1	Tomato	mitochondrion	48.43	45.39
GSMUA_Achr1P20970_001	Banana	mitochondrion	44.09	44.62
GSMUA_Achr2P14600_001	Banana	mitochondrion	41.73	44.17
KRH45269	Soybean	nucleus	37.8	43.84
VIT_01s0011g03530.t01	Wine grape	cytosol, nucleus, plastid	41.34	43.57
KRG90816	Soybean	nucleus	37.4	42.41
HORVU3Hr1G016320.1	Barley	cytosol, nucleus, plastid	46.46	41.84
EES02556	Sorghum	mitochondrion	48.43	41.41
Zm00001d040004_P001	Maize	mitochondrion	48.03	40.94
TraesCS3B01G106900.1	Wheat	cytosol, mitochondrion, nucleus	45.67	39.32
TraesCS3D01G091700.1	Wheat	cytosol, nucleus, plastid	45.28	38.72
Solyc02g092550.2.1	Tomato	extracellular	32.68	38.07
TraesCS4D01G354200.1	Wheat	nucleus	40.94	37.82
Solyc04g077990.2.1	Tomato	nucleus, plasma membrane, plastid	29.92	37.25
Zm00001d010749_P001	Maize	plastid	41.34	37.1
TraesCS4B01G361200.1	Wheat	nucleus	40.16	36.82
Zm00001d010751_P001	Maize	cytosol, mitochondrion, nucleus	45.28	36.74
TraesCS5A01G529400.1	Wheat	nucleus	38.58	36.57
Zm00001d038717_P001	Maize	cytosol, mitochondrion, nucleus	46.06	36.56
Zm00001d029506_P001	Maize	cytosol, mitochondrion, nucleus, plastid	44.09	35.78
Solyc01g107190.2.1	Tomato	mitochondrion, nucleus	30.32	35.48
TraesCS5A01G529300.1	Wheat	cytosol, nucleus, plastid	38.98	34.26
HORVU4Hr1G086700.1	Barley	cytosol, nucleus	40.16	34.0
OQU92400	Sorghum	mitochondrion, nucleus, plastid	43.31	33.54
TraesCS4B01G361100.1	Wheat	cytosol, nucleus, plastid	38.58	33.45
TraesCS4D01G354100.1	Wheat	cytosol, nucleus, plastid	38.58	32.89
KXG22356	Sorghum	plastid	40.55	31.02
KXG22716	Sorghum	plastid	44.88	27.74

Protein Annotations

EnsemblPlants:Solyc05g009320.2.1	EnsemblPlantsGene:Solyc05g009320.2	InterPro:IPR004883	InterPro:LOB	PANTHER:PTHR31304	PANTHER:PTHR31304:SF9
PFAM:PF03195	PFscan:PS50891	SEG:seg	UniParc:UPI0002766A60	UniProt:K4BXA6	MapMan:15.5.24

Description

LOB domain-containing protein 42 [Source:Projected from Arabidopsis thaliana (AT1G68510) UniProtKB/Swiss-Prot;Acc:Q9CA30]

Coordinates

chr5:-:3454579..3455891

Molecular Weight (calculated)

28070.3 Da

IEP (calculated)

6.273

GRAVY (calculated)

-0.434

Length

254 amino acids

Sequence
(BLAST)

001: MRMSCNGCRV LRKGCSENCS LRPSLQWIKS PDSQANATVF LAKFYGRAGL INLINAGPQH LRPAIFRSLL YEACGRIINP VNGSVGLMCS GNWQRCQDAV
101: ESVLKGSTIM QVPINSDDDN NSTDQIVPLK GCDIRHVSKY NSTNSDNQQV KTRNGRLKRK GSTFDSAASA SVEVEAAEEY LLKNQPPLKF SITGWDQFEE
201: REDEMIKRSQ SHDSFSVETV EPTLLVNRVD PVKLEEDGDL LGLDLTLGLM SPTG

Best Arabidopsis Sequence Match ( AT3G02550.1 )
(BLAST)

001: MRMSCNGCRV LRKGCSEDCS IRPCLAWIKS PEAQANATVF LAKFYGRAGL MNLINAGPNH LRPGIFRSLL HEACGRIVNP IYGSVGLLWS GNWQLCQDAV
101: EAVMKGEPVK EIATDAATIG QGPPLKIYDI RHISKDDNSA AAATGSTDLK LAKTRRAKRV STVAIQAESE GKSDEASHDS SLSHQSEIVA AHEGESKESE
201: SNVSEVLAFS PPAVKGSGEI KLDLTLRLEP VSRAYHVVPV KKRRIGVFGT CQKESTCKTE LML

Arabidopsis Description

LBD41LOB domain-containing protein 41 [Source:UniProtKB/Swiss-Prot;Acc:Q9M886]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.