Subcellular Localization
min:
: max
Winner_takes_all: nucleus, cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 1
- cytosol 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G529300.1 | Wheat | cytosol, nucleus, plastid | 79.67 | 82.7 |
| TraesCS4D01G354100.1 | Wheat | cytosol, nucleus, plastid | 82.0 | 82.55 |
| TraesCS4B01G361100.1 | Wheat | cytosol, nucleus, plastid | 80.33 | 82.25 |
| HORVU3Hr1G016320.1 | Barley | cytosol, nucleus, plastid | 52.67 | 56.03 |
| AT1G68510.1 | Thale cress | mitochondrion, nucleus | 35.33 | 45.49 |
| HORVU2Hr1G066080.1 | Barley | nucleus | 44.0 | 43.71 |
| Bra004315.1-P | Field mustard | mitochondrion | 34.33 | 43.46 |
| CDX96013 | Canola | mitochondrion | 34.33 | 43.46 |
| KRH45269 | Soybean | nucleus | 31.67 | 43.38 |
| CDY38588 | Canola | cytosol, mitochondrion, nucleus | 34.67 | 43.33 |
| VIT_01s0011g03530.t01 | Wine grape | cytosol, nucleus, plastid | 33.67 | 41.91 |
| PGSC0003DMT400037711 | Potato | mitochondrion | 34.67 | 41.11 |
| KRG90816 | Soybean | nucleus | 30.0 | 40.18 |
| Solyc05g009320.2.1 | Tomato | mitochondrion | 34.0 | 40.16 |
| HORVU4Hr1G013380.2 | Barley | nucleus | 26.33 | 34.65 |
| HORVU2Hr1G035160.1 | Barley | endoplasmic reticulum, nucleus, plastid | 26.67 | 28.88 |
Protein Annotations
| EnsemblPlants:HORVU4Hr1G086700.1 | EnsemblPlantsGene:HORVU4Hr1G086700 | InterPro:IPR004883 | InterPro:LOB | PANTHER:PTHR31304 | PANTHER:PTHR31304:SF9 |
| PFAM:PF03195 | PFscan:PS50891 | SEG:seg | UniParc:UPI000B465BFC | UniProt:A0A287Q0L8 | MapMan:15.5.24 |
Description
No Description!
Coordinates
chrchr4H:+:634903821..634904932
Molecular Weight (calculated)
31678.8 Da
IEP (calculated)
8.188
GRAVY (calculated)
-0.186
Length
300 amino acids
Sequence
(BLAST)
(BLAST)
001: HHHHHQFTGR PTMRASCNGC RVLRKGCTDD CTIRPCLAWI RGADAQANAT VFLAKFYGRA GLLNLLAAGT DAALRPALFR SLLYEACGRV ANPVYGATGL
101: FCMGRWEACQ DAVQAVFEGR RIAVQSEAVR HPGLVAAFDV RHVPKPMVVP APPGPLGVSR AGRTMFKRAS SSSTAKPTIS SGAKHGDLDR APSHEEPAGS
201: HDHVVEDGGM AVAVAVAAKQ VRGESSADTG AEAHSHVSQA EQNLPMPQLA QGDDDEVGLE LTLGFGPATR LLRSPPARPD AARRSSAECG HIGLLLELPV
101: FCMGRWEACQ DAVQAVFEGR RIAVQSEAVR HPGLVAAFDV RHVPKPMVVP APPGPLGVSR AGRTMFKRAS SSSTAKPTIS SGAKHGDLDR APSHEEPAGS
201: HDHVVEDGGM AVAVAVAAKQ VRGESSADTG AEAHSHVSQA EQNLPMPQLA QGDDDEVGLE LTLGFGPATR LLRSPPARPD AARRSSAECG HIGLLLELPV
001: MRMSCNGCRV LRKGCSEDCS IRPCLAWIKS PEAQANATVF LAKFYGRAGL MNLINAGPNH LRPGIFRSLL HEACGRIVNP IYGSVGLLWS GNWQLCQDAV
101: EAVMKGEPVK EIATDAATIG QGPPLKIYDI RHISKDDNSA AAATGSTDLK LAKTRRAKRV STVAIQAESE GKSDEASHDS SLSHQSEIVA AHEGESKESE
201: SNVSEVLAFS PPAVKGSGEI KLDLTLRLEP VSRAYHVVPV KKRRIGVFGT CQKESTCKTE LML
101: EAVMKGEPVK EIATDAATIG QGPPLKIYDI RHISKDDNSA AAATGSTDLK LAKTRRAKRV STVAIQAESE GKSDEASHDS SLSHQSEIVA AHEGESKESE
201: SNVSEVLAFS PPAVKGSGEI KLDLTLRLEP VSRAYHVVPV KKRRIGVFGT CQKESTCKTE LML
Arabidopsis Description
LBD41LOB domain-containing protein 41 [Source:UniProtKB/Swiss-Prot;Acc:Q9M886]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.