Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G289800.1 | Wheat | nucleus | 97.02 | 97.02 |
| TraesCS2D01G270100.1 | Wheat | nucleus | 97.02 | 96.7 |
| TraesCS2A01G271300.1 | Wheat | nucleus | 97.02 | 95.44 |
| PGSC0003DMT400014630 | Potato | mitochondrion, nucleus, plastid | 45.7 | 56.56 |
| Solyc03g119530.2.1 | Tomato | cytosol, nucleus, plastid | 46.03 | 56.28 |
| HORVU3Hr1G016320.1 | Barley | cytosol, nucleus, plastid | 48.34 | 51.77 |
| VIT_17s0000g03720.t01 | Wine grape | mitochondrion, nucleus, plastid | 45.03 | 50.0 |
| KRH48482 | Soybean | mitochondrion | 34.11 | 44.4 |
| HORVU4Hr1G086700.1 | Barley | cytosol, nucleus | 43.71 | 44.0 |
| HORVU4Hr1G013380.2 | Barley | nucleus | 25.5 | 33.77 |
| HORVU2Hr1G035160.1 | Barley | endoplasmic reticulum, nucleus, plastid | 26.16 | 28.52 |
Protein Annotations
| EMBL:AK361913 | EnsemblPlants:HORVU2Hr1G066080.1 | EnsemblPlantsGene:HORVU2Hr1G066080 | InterPro:IPR004883 | InterPro:LOB | PANTHER:PTHR31304 |
| PANTHER:PTHR31304:SF9 | PFAM:PF03195 | PFscan:PS50891 | SEG:seg | UniParc:UPI00018DFDD0 | UniProt:F2DDE6 |
| MapMan:15.5.24 | : | : | : | : | : |
Description
Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2DDE6]
Coordinates
chrchr2H:-:456865265..456868167
Molecular Weight (calculated)
32915.3 Da
IEP (calculated)
5.965
GRAVY (calculated)
-0.640
Length
302 amino acids
Sequence
(BLAST)
(BLAST)
001: MRLSCNGCRV LRKGCSEDCS IRPCLQWIKS PEAQANATVF LAKFYGRAGL MNLINAGTDD SLRPGIFRSL LYEACGRIVN PIYGSVGLLW SNNWQMCQAA
101: VEAVLSGKPI VQVSSEDAAA DRTPPLKAYD IRHVSTSPAA DGRLHKVAKP GRTRFKRASS ASSHHNPSSD SNNKPKPQPR PPTAEEELDR QHRKEMEEGA
201: FQRAPSHESS DSRHEDPVEP HSQQEASADT EAEAGSHVSQ AEQEQEQSTE PAADHAEEVE KDDEELGLEL TLGFAPVAAR PAGCHLSVRT AAEPAFVGLR
301: FL
101: VEAVLSGKPI VQVSSEDAAA DRTPPLKAYD IRHVSTSPAA DGRLHKVAKP GRTRFKRASS ASSHHNPSSD SNNKPKPQPR PPTAEEELDR QHRKEMEEGA
201: FQRAPSHESS DSRHEDPVEP HSQQEASADT EAEAGSHVSQ AEQEQEQSTE PAADHAEEVE KDDEELGLEL TLGFAPVAAR PAGCHLSVRT AAEPAFVGLR
301: FL
001: MRMSCNGCRV LRKGCSEDCS IRPCLAWIKS PEAQANATVF LAKFYGRAGL MNLINAGPNH LRPGIFRSLL HEACGRIVNP IYGSVGLLWS GNWQLCQDAV
101: EAVMKGEPVK EIATDAATIG QGPPLKIYDI RHISKDDNSA AAATGSTDLK LAKTRRAKRV STVAIQAESE GKSDEASHDS SLSHQSEIVA AHEGESKESE
201: SNVSEVLAFS PPAVKGSGEI KLDLTLRLEP VSRAYHVVPV KKRRIGVFGT CQKESTCKTE LML
101: EAVMKGEPVK EIATDAATIG QGPPLKIYDI RHISKDDNSA AAATGSTDLK LAKTRRAKRV STVAIQAESE GKSDEASHDS SLSHQSEIVA AHEGESKESE
201: SNVSEVLAFS PPAVKGSGEI KLDLTLRLEP VSRAYHVVPV KKRRIGVFGT CQKESTCKTE LML
Arabidopsis Description
LBD41LOB domain-containing protein 41 [Source:UniProtKB/Swiss-Prot;Acc:Q9M886]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.