Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- cytosol 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G289800.1 | Wheat | nucleus | 98.02 | 98.34 |
| HORVU2Hr1G066080.1 | Barley | nucleus | 96.7 | 97.02 |
| TraesCS2A01G271300.1 | Wheat | nucleus | 97.69 | 96.42 |
| PGSC0003DMT400014630 | Potato | mitochondrion, nucleus, plastid | 45.21 | 56.15 |
| Solyc03g119530.2.1 | Tomato | cytosol, nucleus, plastid | 45.54 | 55.87 |
| VIT_17s0000g03720.t01 | Wine grape | mitochondrion, nucleus, plastid | 44.88 | 50.0 |
| TraesCS3D01G091700.1 | Wheat | cytosol, nucleus, plastid | 48.84 | 49.83 |
| TraesCS4D01G354200.1 | Wheat | nucleus | 43.23 | 47.64 |
| KRH48482 | Soybean | mitochondrion | 33.99 | 44.4 |
| TraesCS4D01G354100.1 | Wheat | cytosol, nucleus, plastid | 41.58 | 42.28 |
| TraesCS4D01G077600.1 | Wheat | mitochondrion, nucleus, plastid | 25.74 | 33.91 |
| TraesCS2D01G193400.1 | Wheat | cytosol, nucleus, plastid | 19.14 | 23.87 |
Protein Annotations
| EnsemblPlants:TraesCS2D01G270100.1 | EnsemblPlantsGene:TraesCS2D01G270100 | InterPro:IPR004883 | InterPro:LOB | InterPro:LOBD | PANTHER:PTHR31304 |
| PANTHER:PTHR31304:SF9 | PFAM:PF03195 | PFscan:PS50891 | PIRSF:PIRSF038155 | SEG:seg | MapMan:15.5.24 |
Description
No Description!
Coordinates
chr2D:+:333646671..333647582
Molecular Weight (calculated)
33095.4 Da
IEP (calculated)
5.782
GRAVY (calculated)
-0.623
Length
303 amino acids
Sequence
(BLAST)
(BLAST)
001: MRLSCNGCRV LRKGCSEDCS IRPCLQWIKS PEAQANATVF LAKFYGRAGL MNLINAGTDD SLRPGIFRSL LYEACGRIVN PIYGSVGLLW SNNWQMCQAA
101: VEAVLSGKPI VQVSSEDAAA DRTPPLKAYD IRHVSTSSAA DGRLHKVAKP GRTRFKRASS ASSHHNPSSD SNNKPQPQPR APTAEEELDR QHRKEMQEGA
201: FQRAPSHESS DSRHEDPVEP HCQQEASADT EAEAGSHVSQ AEQEQEQSTE PAAEHAEEVE KEEDEELGLE LTLGFAPVAA RPAGFHLSVR TAAEPAFVGL
301: RFL
101: VEAVLSGKPI VQVSSEDAAA DRTPPLKAYD IRHVSTSSAA DGRLHKVAKP GRTRFKRASS ASSHHNPSSD SNNKPQPQPR APTAEEELDR QHRKEMQEGA
201: FQRAPSHESS DSRHEDPVEP HCQQEASADT EAEAGSHVSQ AEQEQEQSTE PAAEHAEEVE KEEDEELGLE LTLGFAPVAA RPAGFHLSVR TAAEPAFVGL
301: RFL
001: MRMSCNGCRV LRKGCSEDCS IRPCLAWIKS PEAQANATVF LAKFYGRAGL MNLINAGPNH LRPGIFRSLL HEACGRIVNP IYGSVGLLWS GNWQLCQDAV
101: EAVMKGEPVK EIATDAATIG QGPPLKIYDI RHISKDDNSA AAATGSTDLK LAKTRRAKRV STVAIQAESE GKSDEASHDS SLSHQSEIVA AHEGESKESE
201: SNVSEVLAFS PPAVKGSGEI KLDLTLRLEP VSRAYHVVPV KKRRIGVFGT CQKESTCKTE LML
101: EAVMKGEPVK EIATDAATIG QGPPLKIYDI RHISKDDNSA AAATGSTDLK LAKTRRAKRV STVAIQAESE GKSDEASHDS SLSHQSEIVA AHEGESKESE
201: SNVSEVLAFS PPAVKGSGEI KLDLTLRLEP VSRAYHVVPV KKRRIGVFGT CQKESTCKTE LML
Arabidopsis Description
LBD41LOB domain-containing protein 41 [Source:UniProtKB/Swiss-Prot;Acc:Q9M886]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.