Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- cytosol 1
- plastid 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G529300.1 | Wheat | cytosol, nucleus, plastid | 90.6 | 93.43 |
| TraesCS4B01G361100.1 | Wheat | cytosol, nucleus, plastid | 90.27 | 91.81 |
| HORVU4Hr1G086700.1 | Barley | cytosol, nucleus | 82.55 | 82.0 |
| TraesCS4D01G354200.1 | Wheat | nucleus | 63.42 | 68.73 |
| TraesCS3D01G091700.1 | Wheat | cytosol, nucleus, plastid | 56.04 | 56.23 |
| AT1G68510.1 | Thale cress | mitochondrion, nucleus | 35.23 | 45.06 |
| KRH45269 | Soybean | nucleus | 32.89 | 44.75 |
| CDY38588 | Canola | cytosol, mitochondrion, nucleus | 34.56 | 42.92 |
| Bra004315.1-P | Field mustard | mitochondrion | 33.89 | 42.62 |
| CDX96013 | Canola | mitochondrion | 33.89 | 42.62 |
| KRG90816 | Soybean | nucleus | 31.54 | 41.96 |
| TraesCS2D01G270100.1 | Wheat | nucleus | 42.28 | 41.58 |
| PGSC0003DMT400037711 | Potato | mitochondrion | 33.22 | 39.13 |
| VIT_01s0011g03530.t01 | Wine grape | cytosol, nucleus, plastid | 31.54 | 39.0 |
| Solyc05g009320.2.1 | Tomato | mitochondrion | 32.89 | 38.58 |
| TraesCS4D01G077600.1 | Wheat | mitochondrion, nucleus, plastid | 26.51 | 34.35 |
| TraesCS2D01G193400.1 | Wheat | cytosol, nucleus, plastid | 20.13 | 24.69 |
Protein Annotations
| EnsemblPlants:TraesCS4D01G354100.1 | EnsemblPlantsGene:TraesCS4D01G354100 | InterPro:IPR004883 | InterPro:LOB | PANTHER:PTHR31304 | PANTHER:PTHR31304:SF9 |
| PFAM:PF03195 | PFscan:PS50891 | SEG:seg | MapMan:15.5.24 | : | : |
Description
No Description!
Coordinates
chr4D:-:504114944..504115840
Molecular Weight (calculated)
31114.7 Da
IEP (calculated)
6.924
GRAVY (calculated)
-0.173
Length
298 amino acids
Sequence
(BLAST)
(BLAST)
001: MRASCNGCRA LRKGCADDCT IRPCLTWIRG ADAQANATVF LAKFYGRAGL LNLLAAGTDP ALRPALFRSL LYEACGRVAN PVYGATGLFT TGQWEACQDA
101: VQAVFEGRRI PVPSGAVRHP GFVAAFDVRR HVPRPNVVPA PAQAPGPLGV SRAGRTMFKR APSSSTDKPR ISSGAKRGEH DADLERVPSH GESAGSHDHV
201: EDDGVAVAVA VAVAVAAKQV MGESGDTEAE AASHVSQAEQ NPPVPQLARE DDDEIGLELT LGFGPSTRVL RSPPARSDAA SSSGAECGHI GLLLELPV
101: VQAVFEGRRI PVPSGAVRHP GFVAAFDVRR HVPRPNVVPA PAQAPGPLGV SRAGRTMFKR APSSSTDKPR ISSGAKRGEH DADLERVPSH GESAGSHDHV
201: EDDGVAVAVA VAVAVAAKQV MGESGDTEAE AASHVSQAEQ NPPVPQLARE DDDEIGLELT LGFGPSTRVL RSPPARSDAA SSSGAECGHI GLLLELPV
001: MRMSCNGCRV LRKGCSENCS IRPCLQWIKS AESQANATVF LAKFYGRAGL MNLLNTGPDH LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GNWHLCQAAV
101: EAVMRGSPVT PIACDAAVTG QAPPFNNKLC DIRHVSSRDE NVKRRSRGAC KEERNVRSLS HESSLSHESP VSSEETTTEE PKTWIGLELT LGLEPLARGN
201: HVVVPMKKRK LERCGTSEDE DTCKIELGLV CSE
101: EAVMRGSPVT PIACDAAVTG QAPPFNNKLC DIRHVSSRDE NVKRRSRGAC KEERNVRSLS HESSLSHESP VSSEETTTEE PKTWIGLELT LGLEPLARGN
201: HVVVPMKKRK LERCGTSEDE DTCKIELGLV CSE
Arabidopsis Description
LBD40LOB domain-containing protein 40 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZW96]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.