Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
- cytosol 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr2P22720_001 | Banana | cytosol, mitochondrion, nucleus | 29.46 | 78.02 |
| VIT_01s0011g03540.t01 | Wine grape | nucleus | 49.79 | 47.43 |
| AT1G68510.1 | Thale cress | mitochondrion, nucleus | 44.81 | 46.35 |
| Os01t0511000-01 | Rice | cytosol, nucleus, plastid | 35.68 | 46.24 |
| Bra004315.1-P | Field mustard | mitochondrion | 44.81 | 45.57 |
| CDX96013 | Canola | mitochondrion | 44.81 | 45.57 |
| CDY38588 | Canola | cytosol, mitochondrion, nucleus | 44.4 | 44.58 |
| VIT_17s0000g03720.t01 | Wine grape | mitochondrion, nucleus, plastid | 49.79 | 44.12 |
| GSMUA_Achr1P20970_001 | Banana | mitochondrion | 45.64 | 43.82 |
| GSMUA_Achr9P00580_001 | Banana | mitochondrion | 41.91 | 43.16 |
| GSMUA_Achr2P14600_001 | Banana | mitochondrion | 42.32 | 42.5 |
| KRH45269 | Soybean | nucleus | 38.59 | 42.47 |
| VIT_14s0006g02950.t01 | Wine grape | mitochondrion | 49.79 | 42.4 |
| KRG90816 | Soybean | nucleus | 39.0 | 41.96 |
| PGSC0003DMT400037711 | Potato | mitochondrion | 43.57 | 41.5 |
| Solyc05g009320.2.1 | Tomato | mitochondrion | 43.57 | 41.34 |
| HORVU3Hr1G016320.1 | Barley | cytosol, nucleus, plastid | 45.64 | 39.01 |
| EES02556 | Sorghum | mitochondrion | 46.89 | 38.05 |
| TraesCS3B01G106900.1 | Wheat | cytosol, mitochondrion, nucleus | 46.47 | 37.97 |
| Zm00001d040004_P001 | Maize | mitochondrion | 46.47 | 37.58 |
| TraesCS3D01G091700.1 | Wheat | cytosol, nucleus, plastid | 45.64 | 37.04 |
| VIT_03s0091g00670.t01 | Wine grape | cytosol | 29.46 | 36.41 |
| Zm00001d010749_P001 | Maize | plastid | 42.32 | 36.04 |
| Zm00001d010751_P001 | Maize | cytosol, mitochondrion, nucleus | 44.81 | 34.5 |
| Zm00001d038717_P001 | Maize | cytosol, mitochondrion, nucleus | 45.64 | 34.38 |
| VIT_18s0001g09250.t01 | Wine grape | nucleus | 31.54 | 34.23 |
| TraesCS4D01G354200.1 | Wheat | nucleus | 38.59 | 33.82 |
| HORVU4Hr1G086700.1 | Barley | cytosol, nucleus | 41.91 | 33.67 |
| TraesCS4B01G361200.1 | Wheat | nucleus | 38.59 | 33.57 |
| VIT_07s0129g00330.t01 | Wine grape | nucleus | 31.54 | 33.33 |
| TraesCS5A01G529400.1 | Wheat | nucleus | 36.93 | 33.21 |
| TraesCS5A01G529300.1 | Wheat | cytosol, nucleus, plastid | 39.42 | 32.87 |
| TraesCS4B01G361100.1 | Wheat | cytosol, nucleus, plastid | 39.83 | 32.76 |
| Zm00001d029506_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 42.32 | 32.59 |
| TraesCS4D01G354100.1 | Wheat | cytosol, nucleus, plastid | 39.0 | 31.54 |
| OQU92400 | Sorghum | mitochondrion, nucleus, plastid | 41.91 | 30.79 |
| KXG22356 | Sorghum | plastid | 41.91 | 30.42 |
| KXG22716 | Sorghum | plastid | 44.81 | 26.28 |
Protein Annotations
| ArrayExpress:VIT_01s0011g03530 | EMBL:FN595752 | EnsemblPlants:VIT_01s0011g03530.t01 | EnsemblPlantsGene:VIT_01s0011g03530 | EntrezGene:100259299 | EntrezGene:LOC100259299 |
| InterPro:IPR004883 | InterPro:LOB | PANTHER:PTHR31304 | PANTHER:PTHR31304:SF8 | PFAM:PF03195 | PFscan:PS50891 |
| ProteinID:CBI27019 | ProteinID:CBI27019.3 | RefSeq:XP_002282586 | RefSeq:XP_002282586.1 | SEG:seg | unigene:Vvi.22758 |
| UniParc:UPI00019828DC | UniProt:D7T948 | wikigene:100259299 | wikigene:LOC100259299 | MapMan:15.5.24 | : |
Description
No Description!
Coordinates
chr1:+:3204646..3205573
Molecular Weight (calculated)
26848.0 Da
IEP (calculated)
9.523
GRAVY (calculated)
-0.409
Length
241 amino acids
Sequence
(BLAST)
(BLAST)
001: MRTSCNGCRV LRKACSQDCI IKPCLEWIKN PDFQANATLF LAKFYGRAGL INLINAGPQQ LRPAIFRSLL WEACGRVVNP IYGSVGLLWS GDWNRCLDAV
101: DAVLRGVPIA RKPSEATSSS PSDHPVKAYD IRHVSKDFKF PTTENLNRVT APAPKPFKRS SKSKPKPQAS LVFDFATKPA ADQSDKFCDV RLPWPSSHEF
201: NQTPSHEPSL GYHLEWLTKL DTESDKSKVK LELTLGSGTN F
101: DAVLRGVPIA RKPSEATSSS PSDHPVKAYD IRHVSKDFKF PTTENLNRVT APAPKPFKRS SKSKPKPQAS LVFDFATKPA ADQSDKFCDV RLPWPSSHEF
201: NQTPSHEPSL GYHLEWLTKL DTESDKSKVK LELTLGSGTN F
001: MRISCNGCRV LRKGCNQDCT IRPCLQWIKS ADSQANATLF LAKFYGRAGL LNLIESGPDH LRPAIFRSLL YEACGRIVNP VDGSVGLMWS GNWAQCQAAV
101: DAVLNGLPIT HTPLPSASAS HQIIPPHRTY DIRHVAKDPT TGGDSSENLA TRVNANKSKT QTGRFKRESV NQLGECSHDM WQLPSSSATH GYGHFTLENV
201: ESRREAPFNQ SSPNLGFDDQ VDINEVGLEL RLG
101: DAVLNGLPIT HTPLPSASAS HQIIPPHRTY DIRHVAKDPT TGGDSSENLA TRVNANKSKT QTGRFKRESV NQLGECSHDM WQLPSSSATH GYGHFTLENV
201: ESRREAPFNQ SSPNLGFDDQ VDINEVGLEL RLG
Arabidopsis Description
LBD42LBD42 [Source:UniProtKB/TrEMBL;Acc:A0A178W6D5]
SUBAcon: [mitochondrion,nucleus]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.