Factsheet for HORVU3Hr1G016320.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

mitochondrion 1
cytosol 1
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, mitochondrion, plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G106900.1	Wheat	cytosol, mitochondrion, nucleus	88.3	84.41
TraesCS3D01G091700.1	Wheat	cytosol, nucleus, plastid	88.3	83.84
Os01t0511000-01	Rice	cytosol, nucleus, plastid	38.65	58.6
HORVU4Hr1G086700.1	Barley	cytosol, nucleus	56.03	52.67
Zm00001d010751_P001	Maize	cytosol, mitochondrion, nucleus	55.67	50.16
Zm00001d038717_P001	Maize	cytosol, mitochondrion, nucleus	56.38	49.69
HORVU2Hr1G066080.1	Barley	nucleus	51.77	48.34
KRH45269	Soybean	nucleus	37.23	47.95
AT1G68510.1	Thale cress	mitochondrion, nucleus	39.36	47.64
PGSC0003DMT400037711	Potato	mitochondrion	42.55	47.43
Solyc05g009320.2.1	Tomato	mitochondrion	41.84	46.46
KRG90816	Soybean	nucleus	36.52	45.98
OQU92400	Sorghum	mitochondrion, nucleus, plastid	53.19	45.73
Zm00001d029506_P001	Maize	cytosol, mitochondrion, nucleus, plastid	50.71	45.69
VIT_01s0011g03530.t01	Wine grape	cytosol, nucleus, plastid	39.01	45.64
CDX96013	Canola	mitochondrion	38.3	45.57
Bra004315.1-P	Field mustard	mitochondrion	38.3	45.57
CDY38588	Canola	cytosol, mitochondrion, nucleus	38.3	45.0
Zm00001d010749_P001	Maize	plastid	44.33	44.17
KXG22356	Sorghum	plastid	48.23	40.96
HORVU4Hr1G013380.2	Barley	nucleus	28.37	35.09
HORVU2Hr1G035160.1	Barley	endoplasmic reticulum, nucleus, plastid	28.37	28.88

Protein Annotations

EnsemblPlants:HORVU3Hr1G016320.1	EnsemblPlantsGene:HORVU3Hr1G016320	InterPro:IPR004883	InterPro:LOB	PANTHER:PTHR31304	PANTHER:PTHR31304:SF9
PFAM:PF03195	PFscan:PS50891	SEG:seg	UniParc:UPI000B4610E1	UniProt:A0A287K8F7	MapMan:15.5.24

Description

No Description!

Coordinates

chrchr3H:+:39480612..39482097

Molecular Weight (calculated)

29703.1 Da

IEP (calculated)

6.503

GRAVY (calculated)

-0.231

Length

282 amino acids

Sequence
(BLAST)

001: MRMSCNGCRV LRKGCGEGCT IRPCLEWIRS PDAQANATVF LAKFYGRAGL LNLLAAVPDA GLRPPLFRSL LYEACGRMVN PVYGSVGLLW SAQWEACQAA
101: VEAVLKGRPI VRVSSDAPLA PCDIRHVAKP DRPAAAGTLP GVSRAGRTRF KRASSSTAKT KSSFSDANKH DDGLDQAPSH EESAGSHVED GGMAVEQARE
201: EESSEGTEVD AGSHVSQAEH SPAPPVAKDE EAHGDEIGLE LTLGIQTVAP RLVVRSPPAC FGASSSNAQS SHIGLLLELP VS

Best Arabidopsis Sequence Match ( AT3G02550.1 )
(BLAST)

001: MRMSCNGCRV LRKGCSEDCS IRPCLAWIKS PEAQANATVF LAKFYGRAGL MNLINAGPNH LRPGIFRSLL HEACGRIVNP IYGSVGLLWS GNWQLCQDAV
101: EAVMKGEPVK EIATDAATIG QGPPLKIYDI RHISKDDNSA AAATGSTDLK LAKTRRAKRV STVAIQAESE GKSDEASHDS SLSHQSEIVA AHEGESKESE
201: SNVSEVLAFS PPAVKGSGEI KLDLTLRLEP VSRAYHVVPV KKRRIGVFGT CQKESTCKTE LML

Arabidopsis Description

LBD41LOB domain-containing protein 41 [Source:UniProtKB/Swiss-Prot;Acc:Q9M886]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.