CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d010749_P001	Maize	plastid	58.73	68.9
Os01t0511000-01	Rice	cytosol, nucleus, plastid	29.22	52.15
HORVU3Hr1G016320.1	Barley	cytosol, nucleus, plastid	40.96	48.23
TraesCS3B01G106900.1	Wheat	cytosol, mitochondrion, nucleus	42.17	47.46
TraesCS3D01G091700.1	Wheat	cytosol, nucleus, plastid	41.57	46.46
AT1G68510.1	Thale cress	mitochondrion, nucleus	32.23	45.92
CDY38588	Canola	cytosol, mitochondrion, nucleus	32.23	44.58
Bra004315.1-P	Field mustard	mitochondrion	31.02	43.46
CDX96013	Canola	mitochondrion	31.02	43.46
KRG90816	Soybean	nucleus	29.22	43.3
TraesCS5A01G529400.1	Wheat	nucleus	34.94	43.28
TraesCS5A01G529300.1	Wheat	cytosol, nucleus, plastid	37.05	42.56
VIT_01s0011g03530.t01	Wine grape	cytosol, nucleus, plastid	30.42	41.91
OQU92400	Sorghum	mitochondrion, nucleus, plastid	41.27	41.77
KRH45269	Soybean	nucleus	27.41	41.55
PGSC0003DMT400037711	Potato	mitochondrion	31.33	41.11
Solyc05g009320.2.1	Tomato	mitochondrion	31.02	40.55
EES02556	Sorghum	mitochondrion	35.54	39.73
EER97470	Sorghum	cytosol, nucleus, plastid	24.7	38.32
EER92081	Sorghum	cytosol, mitochondrion, nucleus, plastid	24.7	34.89
KXG22716	Sorghum	plastid	39.16	31.63
KXG38039	Sorghum	mitochondrion, nucleus, plastid	22.29	29.96

Protein Annotations

EnsemblPlants:KXG22356	EnsemblPlantsGene:SORBI_3009G199300	GO:GO:0003674	GO:GO:0003824	GO:GO:0006541	GO:GO:0008150
GO:GO:0008152	GO:GO:0008242	GO:GO:0009987	GO:GO:0016787	InterPro:IPR004883	InterPro:LOB
PANTHER:PTHR31304	PANTHER:PTHR31304:SF9	PFAM:PF03195	PFscan:PS50891	ProteinID:KXG22356	ProteinID:KXG22356.2
SEG:seg	UniParc:UPI000B8BB079	UniProt:A0A1B6P9L0	MapMan:15.5.24	:	:

Description

hypothetical protein

Coordinates

chr9:-:54938611..54940027

Molecular Weight (calculated)

34728.2 Da

IEP (calculated)

6.779

GRAVY (calculated)

-0.291

Length

332 amino acids

Sequence
(BLAST)

001: MVPMSGSGST SGTGGGGAAK THRMVTSCNG CRALRKGCSD GCTIRPCLQW IKSPEAQGNA THFLAKFYGR AGLLNLIAAA PAGADCQAVF RSLLYEACGR
101: IVNPVYGAVG LLWSGQWPKC EDAVEAAFKG ELGVPVHVVH VDAPPPPLGA RLGPSSASYD IRHFAKDSDA AVAADLLRFA RAAGRTGFKR GKGSPSYGSK
201: AKLLKGNGEA TKNVRASPSG SPPLGQQQEV AKELEPMPMV MEMELEHDGR RDEDNDHHLK GKGSKENTDV EAAAFHVIQG EAEPPLGNQV LVADQEEEVV
301: VPGLELALGF EPVPVVRQQP SGDQTGSSGL GL

Best Arabidopsis Sequence Match ( AT3G02550.1 )
(BLAST)

001: MRMSCNGCRV LRKGCSEDCS IRPCLAWIKS PEAQANATVF LAKFYGRAGL MNLINAGPNH LRPGIFRSLL HEACGRIVNP IYGSVGLLWS GNWQLCQDAV
101: EAVMKGEPVK EIATDAATIG QGPPLKIYDI RHISKDDNSA AAATGSTDLK LAKTRRAKRV STVAIQAESE GKSDEASHDS SLSHQSEIVA AHEGESKESE
201: SNVSEVLAFS PPAVKGSGEI KLDLTLRLEP VSRAYHVVPV KKRRIGVFGT CQKESTCKTE LML

Arabidopsis Description

LBD41LOB domain-containing protein 41 [Source:UniProtKB/Swiss-Prot;Acc:Q9M886]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.