Factsheet for Zm00001d010749_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	mitochondrion
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d010751_P001	Maize	cytosol, mitochondrion, nucleus	71.73	64.86
Zm00001d038717_P001	Maize	cytosol, mitochondrion, nucleus	72.08	63.75
KXG22356	Sorghum	plastid	68.9	58.73
Os01t0511000-01	Rice	cytosol, nucleus, plastid	35.69	54.3
AT1G68510.1	Thale cress	mitochondrion, nucleus	37.1	45.06
KRH45269	Soybean	nucleus	34.63	44.75
HORVU3Hr1G016320.1	Barley	cytosol, nucleus, plastid	44.17	44.33
KRG90816	Soybean	nucleus	34.63	43.75
TraesCS3B01G106900.1	Wheat	cytosol, mitochondrion, nucleus	45.23	43.39
TraesCS5A01G529400.1	Wheat	nucleus	40.99	43.28
CDY38588	Canola	cytosol, mitochondrion, nucleus	36.4	42.92
TraesCS3D01G091700.1	Wheat	cytosol, nucleus, plastid	44.88	42.76
Bra004315.1-P	Field mustard	mitochondrion	35.69	42.62
CDX96013	Canola	mitochondrion	35.69	42.62
VIT_01s0011g03530.t01	Wine grape	cytosol, nucleus, plastid	36.04	42.32
PGSC0003DMT400037711	Potato	mitochondrion	37.46	41.9
Solyc05g009320.2.1	Tomato	mitochondrion	37.1	41.34
TraesCS5A01G529300.1	Wheat	cytosol, nucleus, plastid	41.7	40.83
Zm00001d029506_P001	Maize	cytosol, mitochondrion, nucleus, plastid	44.88	40.58
Zm00001d040004_P001	Maize	mitochondrion	39.93	37.92
Zm00001d029602_P001	Maize	cytosol, mitochondrion, nucleus, plastid	27.92	36.41
Zm00001d006739_P001	Maize	cytosol, mitochondrion, nucleus, plastid	26.15	34.91
Zm00001d021995_P001	Maize	cytosol, mitochondrion, nucleus, plastid	26.5	34.88
Zm00001d033347_P001	Maize	mitochondrion, nucleus, plastid	26.86	30.28
Zm00001d029601_P003	Maize	cytosol	24.73	21.28

Protein Annotations

EnsemblPlants:Zm00001d010749_P001	EnsemblPlants:Zm00001d010749_T001	EnsemblPlantsGene:Zm00001d010749	EntrezGene:103635844	InterPro:IPR004883	InterPro:LOB
PANTHER:PTHR31304	PANTHER:PTHR31304:SF9	PFAM:PF03195	PFscan:PS50891	ProteinID:AIB05258.1	ProteinID:AQK94784.1
SEG:seg	UniParc:UPI000221F19F	UniProt:K7VH99	MapMan:15.5.24	:	:

Description

LBD-transcription factor 37LOB domain-containing protein 42

Coordinates

chr8:-:126702595..126703446

Molecular Weight (calculated)

29604.1 Da

IEP (calculated)

5.653

GRAVY (calculated)

-0.106

Length

283 amino acids

Sequence
(BLAST)

001: MLPISGSVSA TGGAKARMIT SCSGCRVLRK GCTDACTIRP CLQWMENPEA QANATFFLAK FYGRAGLLNL IAAAPDDADS RASVFRSLLY EACGRIVNPL
101: YGSVGLLWSG QWQKCVDAVD AVLVKGDLVV QADAAAAAPP PLGAACDIRH FPKDPDAAVA ADLLRFARAG VKRAGSSSNN SSKQAKLLKG NAGKKRASRS
201: PPLGQQQEAE ELVPVPMVVE LEHGEESAAS HHHHLQLQGS EEDAGAEAAS LVKQAEAAPP VSNQVLVADQ EAEEDVGLEL TLG

Best Arabidopsis Sequence Match ( AT3G02550.1 )
(BLAST)

001: MRMSCNGCRV LRKGCSEDCS IRPCLAWIKS PEAQANATVF LAKFYGRAGL MNLINAGPNH LRPGIFRSLL HEACGRIVNP IYGSVGLLWS GNWQLCQDAV
101: EAVMKGEPVK EIATDAATIG QGPPLKIYDI RHISKDDNSA AAATGSTDLK LAKTRRAKRV STVAIQAESE GKSDEASHDS SLSHQSEIVA AHEGESKESE
201: SNVSEVLAFS PPAVKGSGEI KLDLTLRLEP VSRAYHVVPV KKRRIGVFGT CQKESTCKTE LML

Arabidopsis Description

LBD41LOB domain-containing protein 41 [Source:UniProtKB/Swiss-Prot;Acc:Q9M886]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.