Factsheet for Zm00001d038717_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

mitochondrion 3
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d010751_P001	Maize	cytosol, mitochondrion, nucleus	84.06	85.94
Zm00001d010749_P001	Maize	plastid	63.75	72.08
Os01t0511000-01	Rice	cytosol, nucleus, plastid	35.94	61.83
HORVU3Hr1G016320.1	Barley	cytosol, nucleus, plastid	49.69	56.38
TraesCS3B01G106900.1	Wheat	cytosol, mitochondrion, nucleus	50.31	54.58
TraesCS3D01G091700.1	Wheat	cytosol, nucleus, plastid	49.69	53.54
Zm00001d029506_P001	Maize	cytosol, mitochondrion, nucleus, plastid	51.56	52.72
TraesCS5A01G529400.1	Wheat	nucleus	43.44	51.87
TraesCS5A01G529300.1	Wheat	cytosol, nucleus, plastid	44.38	49.13
AT1G68510.1	Thale cress	mitochondrion, nucleus	35.31	48.5
KRG90816	Soybean	nucleus	32.5	46.43
PGSC0003DMT400037711	Potato	mitochondrion	36.56	46.25
Solyc05g009320.2.1	Tomato	mitochondrion	36.56	46.06
KRH45269	Soybean	nucleus	31.25	45.66
VIT_01s0011g03530.t01	Wine grape	cytosol, nucleus, plastid	34.38	45.64
CDY38588	Canola	cytosol, mitochondrion, nucleus	33.75	45.0
Bra004315.1-P	Field mustard	mitochondrion	33.12	44.73
CDX96013	Canola	mitochondrion	33.12	44.73
Zm00001d040004_P001	Maize	mitochondrion	40.62	43.62
Zm00001d006739_P001	Maize	cytosol, mitochondrion, nucleus, plastid	27.5	41.51
Zm00001d021995_P001	Maize	cytosol, mitochondrion, nucleus, plastid	27.81	41.4
Zm00001d029602_P001	Maize	cytosol, mitochondrion, nucleus, plastid	27.19	40.09
Zm00001d033347_P001	Maize	mitochondrion, nucleus, plastid	26.56	33.86
Zm00001d029601_P003	Maize	cytosol	24.38	23.71

Protein Annotations

EnsemblPlants:Zm00001d038717_P001	EnsemblPlants:Zm00001d038717_T001	EnsemblPlantsGene:Zm00001d038717	EntrezGene:100283251	InterPro:IPR004883	InterPro:LOB
PANTHER:PTHR31304	PANTHER:PTHR31304:SF9	PFAM:PF03195	PFscan:PS50891	ProteinID:AQK87618.1	SEG:seg
UniParc:UPI0002218511	UniProt:A0A1D6M9Z4	MapMan:15.5.24	:	:	:

Description

LBD-transcription factor 33Seed specific protein Bn15D17A

Coordinates

chr6:-:163280343..163281305

Molecular Weight (calculated)

34031.0 Da

IEP (calculated)

6.047

GRAVY (calculated)

-0.307

Length

320 amino acids

Sequence
(BLAST)

001: MRMSCNGCRV LRKGCSDACT IRPCLQWIDS PEAQANATVF LAKFYGRAGL LNLLAAAPDD AARPAVFRSL LYEACGRIVN PVYGSVGLLW SRRWQSCVDA
101: VEAVLKGDPV VQVDAGSEAA AAPAPLLGAS RPAAPPAAYD IRHVARDPDA VAAADLLRVA RGGGRRRFKR AGSSSNACKA KPLKGKASSN ERASPSPTQR
201: QHQQETEELE LEPVPMVVEL EHGEESAGSH DHHHHLQPQG SEEDTDVEAA SHVSQAEAEP PVSSQSQALV ADQEGEEVRL ELTLGFEPVV RQQPRLSCCD
301: SSGLSAASSL IGLRLQLPAA

Best Arabidopsis Sequence Match ( AT3G02550.1 )
(BLAST)

001: MRMSCNGCRV LRKGCSEDCS IRPCLAWIKS PEAQANATVF LAKFYGRAGL MNLINAGPNH LRPGIFRSLL HEACGRIVNP IYGSVGLLWS GNWQLCQDAV
101: EAVMKGEPVK EIATDAATIG QGPPLKIYDI RHISKDDNSA AAATGSTDLK LAKTRRAKRV STVAIQAESE GKSDEASHDS SLSHQSEIVA AHEGESKESE
201: SNVSEVLAFS PPAVKGSGEI KLDLTLRLEP VSRAYHVVPV KKRRIGVFGT CQKESTCKTE LML

Arabidopsis Description

LBD41LOB domain-containing protein 41 [Source:UniProtKB/Swiss-Prot;Acc:Q9M886]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.