Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- mitochondrion 5
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES02556 | Sorghum | mitochondrion | 87.92 | 88.22 |
| GSMUA_Achr2P14600_001 | Banana | mitochondrion | 41.28 | 51.25 |
| PGSC0003DMT400037711 | Potato | mitochondrion | 40.94 | 48.22 |
| Solyc05g009320.2.1 | Tomato | mitochondrion | 40.94 | 48.03 |
| AT1G68510.1 | Thale cress | mitochondrion, nucleus | 36.91 | 47.21 |
| VIT_01s0011g03530.t01 | Wine grape | cytosol, nucleus, plastid | 37.58 | 46.47 |
| CDY38588 | Canola | cytosol, mitochondrion, nucleus | 36.58 | 45.42 |
| KRH45269 | Soybean | nucleus | 33.22 | 45.21 |
| Bra004315.1-P | Field mustard | mitochondrion | 35.91 | 45.15 |
| CDX96013 | Canola | mitochondrion | 35.91 | 45.15 |
| KRG90816 | Soybean | nucleus | 32.21 | 42.86 |
| Zm00001d006739_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 29.53 | 41.51 |
| Zm00001d029602_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 29.87 | 41.01 |
| Zm00001d029506_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 42.95 | 40.89 |
| Zm00001d038717_P001 | Maize | cytosol, mitochondrion, nucleus | 43.62 | 40.62 |
| Zm00001d021995_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 29.19 | 40.47 |
| Zm00001d010751_P001 | Maize | cytosol, mitochondrion, nucleus | 42.28 | 40.26 |
| Zm00001d010749_P001 | Maize | plastid | 37.92 | 39.93 |
| Zm00001d033347_P001 | Maize | mitochondrion, nucleus, plastid | 28.52 | 33.86 |
| Zm00001d029601_P003 | Maize | cytosol | 24.5 | 22.19 |
Protein Annotations
| EnsemblPlants:Zm00001d040004_P001 | EnsemblPlants:Zm00001d040004_T001 | EnsemblPlantsGene:Zm00001d040004 | EntrezGene:103649851 | InterPro:IPR004883 | InterPro:LOB |
| InterPro:LOBD | PANTHER:PTHR31304 | PANTHER:PTHR31304:SF10 | PFAM:PF03195 | PFscan:PS50891 | PIRSF:PIRSF038155 |
| ProteinID:ONM30274.1 | SEG:seg | UniParc:UPI0002212CD4 | UniProt:A0A1D6MM36 | MapMan:15.5.24 | : |
Description
LBD-transcription factor 17LOB domain-containing protein 42
Coordinates
chr3:-:22562754..22564198
Molecular Weight (calculated)
32358.0 Da
IEP (calculated)
7.796
GRAVY (calculated)
-0.471
Length
298 amino acids
Sequence
(BLAST)
(BLAST)
001: MRMSCNGCRV LRKGCSDNCA IRPCLQWIRS PDAQGNATVF LAKFYGRAGL INLITAGPEH VRPAIFRSLL YEACGRMLNP VYGSVGLLWS GNWQLCQAAV
101: ESVLRGIPIA QPPPTATAVP PLRSCDIRHV ARREAGRGAV DAGLHRMANS SRGQFKRSGA QHRSADSGSI ELVFSQPSAA SSMLVDIRQA QPLNWAPRHP
201: SPHQYYSASH DDDAVRESDD SKASVDTVDV SHVSQSEPAE PPRESNERAD GLDLTLGLPP TAHKVERLET SSDVDDDQTS HRGEPTKLGF AMADSRAR
101: ESVLRGIPIA QPPPTATAVP PLRSCDIRHV ARREAGRGAV DAGLHRMANS SRGQFKRSGA QHRSADSGSI ELVFSQPSAA SSMLVDIRQA QPLNWAPRHP
201: SPHQYYSASH DDDAVRESDD SKASVDTVDV SHVSQSEPAE PPRESNERAD GLDLTLGLPP TAHKVERLET SSDVDDDQTS HRGEPTKLGF AMADSRAR
001: MRMSCNGCRV LRKGCSEDCS IRPCLAWIKS PEAQANATVF LAKFYGRAGL MNLINAGPNH LRPGIFRSLL HEACGRIVNP IYGSVGLLWS GNWQLCQDAV
101: EAVMKGEPVK EIATDAATIG QGPPLKIYDI RHISKDDNSA AAATGSTDLK LAKTRRAKRV STVAIQAESE GKSDEASHDS SLSHQSEIVA AHEGESKESE
201: SNVSEVLAFS PPAVKGSGEI KLDLTLRLEP VSRAYHVVPV KKRRIGVFGT CQKESTCKTE LML
101: EAVMKGEPVK EIATDAATIG QGPPLKIYDI RHISKDDNSA AAATGSTDLK LAKTRRAKRV STVAIQAESE GKSDEASHDS SLSHQSEIVA AHEGESKESE
201: SNVSEVLAFS PPAVKGSGEI KLDLTLRLEP VSRAYHVVPV KKRRIGVFGT CQKESTCKTE LML
Arabidopsis Description
LBD41LOB domain-containing protein 41 [Source:UniProtKB/Swiss-Prot;Acc:Q9M886]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.