Factsheet for PGSC0003DMT400037711

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 4
mitochondrion 4
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g009320.2.1	Tomato	mitochondrion	91.7	91.34
GSMUA_Achr2P22720_001	Banana	cytosol, mitochondrion, nucleus	28.46	79.12
PGSC0003DMT400014630	Potato	mitochondrion, nucleus, plastid	48.22	50.0
Os01t0511000-01	Rice	cytosol, nucleus, plastid	36.36	49.46
AT1G68510.1	Thale cress	mitochondrion, nucleus	45.06	48.93
GSMUA_Achr9P00580_001	Banana	mitochondrion	43.87	47.44
PGSC0003DMT400032938	Potato	mitochondrion	50.2	46.52
Bra004315.1-P	Field mustard	mitochondrion	43.08	45.99
CDX96013	Canola	mitochondrion	43.08	45.99
CDY38588	Canola	cytosol, mitochondrion, nucleus	43.48	45.83
GSMUA_Achr1P20970_001	Banana	mitochondrion	45.45	45.82
GSMUA_Achr2P14600_001	Banana	mitochondrion	41.5	43.75
VIT_01s0011g03530.t01	Wine grape	cytosol, nucleus, plastid	41.5	43.57
KRH45269	Soybean	nucleus	37.15	42.92
HORVU3Hr1G016320.1	Barley	cytosol, nucleus, plastid	47.43	42.55
KRG90816	Soybean	nucleus	36.76	41.52
EES02556	Sorghum	mitochondrion	48.22	41.08
Zm00001d040004_P001	Maize	mitochondrion	48.22	40.94
TraesCS3B01G106900.1	Wheat	cytosol, mitochondrion, nucleus	46.25	39.66
TraesCS3D01G091700.1	Wheat	cytosol, nucleus, plastid	46.25	39.39
PGSC0003DMT400064185	Potato	nucleus	32.81	39.15
TraesCS4D01G354200.1	Wheat	nucleus	41.5	38.18
Zm00001d010749_P001	Maize	plastid	41.9	37.46
TraesCS4B01G361200.1	Wheat	nucleus	40.71	37.18
TraesCS5A01G529400.1	Wheat	nucleus	39.13	36.94
Zm00001d010751_P001	Maize	cytosol, mitochondrion, nucleus	45.45	36.74
Zm00001d038717_P001	Maize	cytosol, mitochondrion, nucleus	46.25	36.56
PGSC0003DMT400055393	Potato	nucleus	29.25	36.27
Zm00001d029506_P001	Maize	cytosol, mitochondrion, nucleus, plastid	44.66	36.1
PGSC0003DMT400066165	Potato	mitochondrion, nucleus	30.83	35.94
HORVU4Hr1G086700.1	Barley	cytosol, nucleus	41.11	34.67
TraesCS5A01G529300.1	Wheat	cytosol, nucleus, plastid	39.53	34.6
OQU92400	Sorghum	mitochondrion, nucleus, plastid	44.66	34.45
TraesCS4B01G361100.1	Wheat	cytosol, nucleus, plastid	39.13	33.79
TraesCS4D01G354100.1	Wheat	cytosol, nucleus, plastid	39.13	33.22
KXG22356	Sorghum	plastid	41.11	31.33
KXG22716	Sorghum	plastid	45.45	27.98

Protein Annotations

EnsemblPlants:PGSC0003DMT400037711	EnsemblPlantsGene:PGSC0003DMG400014547	EntrezGene:102606392	InterPro:IPR004883	InterPro:LOB	PANTHER:PTHR31304
PANTHER:PTHR31304:SF9	PFAM:PF03195	PFscan:PS50891	PGSC:PGSC0003DMG400014547	RefSeq:XP_006344137.1	SEG:seg
UniParc:UPI000295829F	UniProt:M1B5R6	MapMan:15.5.24	:	:	:

Description

LOB domain-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400014547]

Coordinates

chr5:+:2923715..2925346

Molecular Weight (calculated)

27920.0 Da

IEP (calculated)

5.395

GRAVY (calculated)

-0.426

Length

253 amino acids

Sequence
(BLAST)

001: MRMSCNGCRV LRKGCSENCS LRPSLQWIKS PDSQANATVF LAKFYGRAGL INLINAGPDH LRPAIFRSLL YEACGRIINP VNGSVGLMCS GNWQRCQDAV
101: ESVLKGSTIM QVPINNDDDD NNNNNTDQIV PLKGCDIRHV SKNNSDNQQV IKTRNGRLKR KGTFDSVASA SAEAEAAEEY LLKNQPPLKF SITGWDQFEE
201: IDDELIKRAA SHDSFSVETV EPTLLVNRVD PVKLEEDGDH VGLELTLGLM SPT

Best Arabidopsis Sequence Match ( AT3G02550.1 )
(BLAST)

001: MRMSCNGCRV LRKGCSEDCS IRPCLAWIKS PEAQANATVF LAKFYGRAGL MNLINAGPNH LRPGIFRSLL HEACGRIVNP IYGSVGLLWS GNWQLCQDAV
101: EAVMKGEPVK EIATDAATIG QGPPLKIYDI RHISKDDNSA AAATGSTDLK LAKTRRAKRV STVAIQAESE GKSDEASHDS SLSHQSEIVA AHEGESKESE
201: SNVSEVLAFS PPAVKGSGEI KLDLTLRLEP VSRAYHVVPV KKRRIGVFGT CQKESTCKTE LML

Arabidopsis Description

LBD41LOB domain-containing protein 41 [Source:UniProtKB/Swiss-Prot;Acc:Q9M886]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.