Factsheet for GSMUA_Achr1P20970_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 4
mitochondrion 4
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P22720_001	Banana	cytosol, mitochondrion, nucleus	29.08	80.22
GSMUA_Achr9P00580_001	Banana	mitochondrion	60.96	65.38
GSMUA_Achr4P06820_001	Banana	cytosol, mitochondrion, plastid	54.58	58.55
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plastid	52.59	57.89
GSMUA_Achr4P13790_001	Banana	mitochondrion	52.59	56.9
GSMUA_Achr3P29520_001	Banana	mitochondrion	52.59	56.65
GSMUA_Achr9P21360_001	Banana	mitochondrion	48.61	54.46
GSMUA_Achr2P14600_001	Banana	mitochondrion	48.61	50.83
AT1G68510.1	Thale cress	mitochondrion, nucleus	43.43	46.78
KRH45269	Soybean	nucleus	39.84	45.66
VIT_01s0011g03530.t01	Wine grape	cytosol, nucleus, plastid	43.82	45.64
PGSC0003DMT400037711	Potato	mitochondrion	45.82	45.45
CDX96013	Canola	mitochondrion	41.83	44.3
Bra004315.1-P	Field mustard	mitochondrion	41.83	44.3
CDY38588	Canola	cytosol, mitochondrion, nucleus	42.23	44.17
Solyc05g009320.2.1	Tomato	mitochondrion	44.62	44.09
GSMUA_Achr3P18860_001	Banana	cytosol	33.07	43.68
GSMUA_Achr6P07770_001	Banana	mitochondrion	30.28	41.3
KRG90816	Soybean	nucleus	36.65	41.07
GSMUA_Achr4P03700_001	Banana	cytosol, mitochondrion, nucleus	52.19	40.18
GSMUA_Achr3P30130_001	Banana	nucleus	33.07	39.9
GSMUA_Achr7P26260_001	Banana	mitochondrion	33.07	39.15
GSMUA_Achr4P14150_001	Banana	mitochondrion	33.47	38.89
GSMUA_Achr4P32550_001	Banana	mitochondrion	30.28	36.19
GSMUA_Achr2P13440_001	Banana	mitochondrion, nucleus, plastid	29.48	35.41

Protein Annotations

EnsemblPlants:GSMUA_Achr1P20970_001	EnsemblPlants:GSMUA_Achr1T20970_001	EnsemblPlantsGene:GSMUA_Achr1G20970_001	InterPro:IPR004883	InterPro:LOB	PANTHER:PTHR31304
PANTHER:PTHR31304:SF9	PFAM:PF03195	PFscan:PS50891	SEG:seg	UniParc:UPI00029576FB	UniProt:M0S1Q5
MapMan:15.5.24	:	:	:	:	:

Description

LOB domain-containing protein 41 [Source:GMGC_GENE;Acc:GSMUA_Achr1G20970_001]

Coordinates

chr1:-:15795497..15796353

Molecular Weight (calculated)

26719.0 Da

IEP (calculated)

10.151

GRAVY (calculated)

-0.200

Length

251 amino acids

Sequence
(BLAST)

001: MRKSCNGCRI LRKACTDGCT IRPCLQWIKN PEAQANATAF LAKFYGRAGL VNLINAGTEH LRPAIFRSLL FEACGRIVNP VYGSVGLLWS GSWQLCQAAV
101: EAVLKGAPII QISSDSAAGA IPAFKAHDIR HVSKNLSAGG VPGDLHEVAR KSRTRFKRSA GSPAALVVSK PGLFRRAARQ ETEEEASRED GSAFSAEGSH
201: VILGEPEGVR LDLRLGLEPE NRTGERGAEA KVRGASPSDA RPVGPRLSLA A

Best Arabidopsis Sequence Match ( AT1G67100.1 )
(BLAST)

001: MRMSCNGCRV LRKGCSENCS IRPCLQWIKS AESQANATVF LAKFYGRAGL MNLLNTGPDH LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GNWHLCQAAV
101: EAVMRGSPVT PIACDAAVTG QAPPFNNKLC DIRHVSSRDE NVKRRSRGAC KEERNVRSLS HESSLSHESP VSSEETTTEE PKTWIGLELT LGLEPLARGN
201: HVVVPMKKRK LERCGTSEDE DTCKIELGLV CSE

Arabidopsis Description

LBD40LOB domain-containing protein 40 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZW96]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.