Factsheet for GSMUA_Achr9P21360_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 4
mitochondrion 4
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P22720_001	Banana	cytosol, mitochondrion, nucleus	32.59	80.22
GSMUA_Achr3P29520_001	Banana	mitochondrion	75.0	72.1
GSMUA_Achr4P06820_001	Banana	cytosol, mitochondrion, plastid	75.0	71.79
GSMUA_Achr4P13790_001	Banana	mitochondrion	70.98	68.53
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plastid	65.18	64.04
GSMUA_Achr9P00580_001	Banana	mitochondrion	60.71	58.12
CDY34735	Canola	nucleus	47.77	56.91
CDY54302	Canola	cytosol, mitochondrion, nucleus	37.5	56.76
AT1G67100.1	Thale cress	mitochondrion	55.36	53.22
CDY12617	Canola	mitochondrion	55.8	50.61
CDY42342	Canola	mitochondrion	55.36	50.2
VIT_01s0011g03540.t01	Wine grape	nucleus	55.8	49.41
KRH18248	Soybean	nucleus	62.5	48.61
GSMUA_Achr1P20970_001	Banana	mitochondrion	54.46	48.61
Bra021433.1-P	Field mustard	nucleus	56.7	48.11
CDX74249	Canola	nucleus	55.8	48.08
KRH46923	Soybean	mitochondrion	62.95	47.64
KRG93864	Soybean	nucleus	62.05	47.44
CDX91999	Canola	nucleus	54.91	47.31
VIT_14s0006g02950.t01	Wine grape	mitochondrion	59.38	47.0
PGSC0003DMT400032938	Potato	mitochondrion	57.14	46.89
KRH01759	Soybean	mitochondrion	62.95	46.84
AT3G02550.1	Thale cress	nucleus	54.91	46.77
Solyc02g085910.2.1	Tomato	mitochondrion	56.25	46.49
GSMUA_Achr4P03700_001	Banana	cytosol, mitochondrion, nucleus	66.96	46.01
GSMUA_Achr2P14600_001	Banana	mitochondrion	47.32	44.17
GSMUA_Achr3P18860_001	Banana	cytosol	37.05	43.68
GSMUA_Achr6P07770_001	Banana	mitochondrion	33.93	41.3
GSMUA_Achr3P30130_001	Banana	nucleus	37.5	40.38
GSMUA_Achr4P14150_001	Banana	mitochondrion	37.05	38.43
GSMUA_Achr7P26260_001	Banana	mitochondrion	35.27	37.26
GSMUA_Achr4P32550_001	Banana	mitochondrion	31.7	33.81
GSMUA_Achr2P13440_001	Banana	mitochondrion, nucleus, plastid	31.25	33.49

Protein Annotations

EnsemblPlants:GSMUA_Achr9P21360_001	EnsemblPlants:GSMUA_Achr9T21360_001	EnsemblPlantsGene:GSMUA_Achr9G21360_001	InterPro:IPR004883	InterPro:LOB	PANTHER:PTHR31304
PANTHER:PTHR31304:SF9	PFAM:PF03195	PFscan:PS50891	SEG:seg	UniParc:UPI000296C887	UniProt:M0U295
MapMan:15.5.24	:	:	:	:	:

Description

LOB domain-containing protein 41 [Source:GMGC_GENE;Acc:GSMUA_Achr9G21360_001]

Coordinates

chr9:-:26455540..26456689

Molecular Weight (calculated)

24500.3 Da

IEP (calculated)

6.489

GRAVY (calculated)

-0.260

Length

224 amino acids

Sequence
(BLAST)

001: MRMSCNGCRV LRKGCGENCS IRPCLQWIKS PESQANATVF LAKFYGRAGL MNLINAVPDH LQPAIFRSLL YEACGRIVNP IYGSVGLLWS GNWQLCQTAV
101: EAVLKGAPIV QIPSETAAST PAPPLQACDI RHVFKKPRTA AELHNRNRKG GECRENECMS LADTAEEASH VSQGEPDETE EDELGLELTL GFKPVSWWSR
201: LVLSDRDTKA CTTDLNLAPP SATS

Best Arabidopsis Sequence Match ( AT1G67100.1 )
(BLAST)

001: MRMSCNGCRV LRKGCSENCS IRPCLQWIKS AESQANATVF LAKFYGRAGL MNLLNTGPDH LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GNWHLCQAAV
101: EAVMRGSPVT PIACDAAVTG QAPPFNNKLC DIRHVSSRDE NVKRRSRGAC KEERNVRSLS HESSLSHESP VSSEETTTEE PKTWIGLELT LGLEPLARGN
201: HVVVPMKKRK LERCGTSEDE DTCKIELGLV CSE

Arabidopsis Description

LBD40LOB domain-containing protein 40 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZW96]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.