CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra021433.1-P	Field mustard	nucleus	98.94	70.45
CDY54302	Canola	cytosol, mitochondrion, nucleus	52.13	66.22
AT3G02550.1	Thale cress	nucleus	87.77	62.74
CDX74249	Canola	nucleus	86.17	62.31
CDX91999	Canola	nucleus	86.17	62.31
CDY42342	Canola	mitochondrion	65.96	50.2
CDY12617	Canola	mitochondrion	65.96	50.2
GSMUA_Achr4P06820_001	Banana	cytosol, mitochondrion, plastid	61.17	49.15
GSMUA_Achr4P13790_001	Banana	mitochondrion	60.11	48.71
GSMUA_Achr9P21360_001	Banana	mitochondrion	56.91	47.77
VIT_01s0011g03540.t01	Wine grape	nucleus	58.51	43.48
PGSC0003DMT400032938	Potato	mitochondrion	60.64	41.76
Solyc02g085910.2.1	Tomato	mitochondrion	60.11	41.7
CDX96013	Canola	mitochondrion	46.81	37.13
CDY38588	Canola	cytosol, mitochondrion, nucleus	46.28	36.25
GSMUA_Achr4P03700_001	Banana	cytosol, mitochondrion, nucleus	60.64	34.97
CDY17741	Canola	nucleus	38.3	32.88
CDY37852	Canola	nucleus	37.23	32.26
CDY58550	Canola	nucleus	37.23	32.26
CDY43575	Canola	nucleus	37.23	31.67
CDX69315	Canola	nucleus	37.23	31.39
CDY67844	Canola	nucleus	37.23	30.84
CDY67455	Canola	nucleus	37.23	30.7
CDX81315	Canola	nucleus	38.3	30.51
CDY02101	Canola	nucleus	38.3	29.88
CDY29564	Canola	nucleus	36.7	29.74
CDX75662	Canola	nucleus	37.23	29.54
CDX72636	Canola	mitochondrion, nucleus	36.17	29.31
CDY23026	Canola	nucleus	37.23	29.17
CDX81265	Canola	nucleus	36.17	28.57
Os01t0129600-00	Rice	cytosol	35.64	19.76

Protein Annotations

EnsemblPlants:CDY34735	EnsemblPlantsGene:GSBRNA2T00057270001	InterPro:IPR004883	InterPro:LOB	PANTHER:PTHR31304	PANTHER:PTHR31304:SF8
PFAM:PF03195	PFscan:PS50891	ProteinID:CDY34735	ProteinID:CDY34735.1	SEG:seg	UniParc:UPI0004EEDC25
UniProt:A0A078H891	MapMan:15.5.24	:	:	:	:

Description

BnaA01g32900DBnaA01g32900D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H891]

Coordinates

chrLK032340:-:388080..390552

Molecular Weight (calculated)

20463.5 Da

IEP (calculated)

7.758

GRAVY (calculated)

-0.182

Length

188 amino acids

Sequence
(BLAST)

001: MRMSCNGCRV LRKGCSDDCS IRPCLGWIKS PEAQANATVF LAKFYGRAGL MNLINAGPDH LRPGIFRSLL HEACGRIVNP IYGSVGLLWS GNWQLCQAAA
101: SHHSSLSHQS EVVVAPHEGE SKETESNNSE VMTFSPPAVQ GSGEIKLDLT LGLEPVSRAD HVVPVKKRKM GVFSTWQEES SCKTDLVL

Best Arabidopsis Sequence Match ( AT1G67100.1 )
(BLAST)

001: MRMSCNGCRV LRKGCSENCS IRPCLQWIKS AESQANATVF LAKFYGRAGL MNLLNTGPDH LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GNWHLCQAAV
101: EAVMRGSPVT PIACDAAVTG QAPPFNNKLC DIRHVSSRDE NVKRRSRGAC KEERNVRSLS HESSLSHESP VSSEETTTEE PKTWIGLELT LGLEPLARGN
201: HVVVPMKKRK LERCGTSEDE DTCKIELGLV CSE

Arabidopsis Description

LBD40LOB domain-containing protein 40 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZW96]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.