Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 3
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY29564 | Canola | nucleus | 93.1 | 93.1 |
| CDX69315 | Canola | nucleus | 75.0 | 78.03 |
| CDX75662 | Canola | nucleus | 75.43 | 73.84 |
| CDX81265 | Canola | nucleus | 72.41 | 70.59 |
| AT4G37540.1 | Thale cress | nucleus | 71.12 | 68.75 |
| PGSC0003DMT400064185 | Potato | nucleus | 55.6 | 60.85 |
| GSMUA_Achr3P18860_001 | Banana | cytosol | 49.14 | 60.0 |
| VIT_07s0129g00330.t01 | Wine grape | nucleus | 58.62 | 59.65 |
| Solyc02g092550.2.1 | Tomato | extracellular | 55.6 | 59.17 |
| KRH58049 | Soybean | mitochondrion, nucleus | 57.33 | 58.59 |
| KRH04451 | Soybean | nucleus | 57.76 | 58.26 |
| CDY37852 | Canola | nucleus | 53.45 | 57.14 |
| CDY58550 | Canola | nucleus | 53.02 | 56.68 |
| CDY17741 | Canola | nucleus | 53.45 | 56.62 |
| CDY67844 | Canola | nucleus | 55.17 | 56.39 |
| CDY67455 | Canola | nucleus | 55.17 | 56.14 |
| CDY43575 | Canola | nucleus | 53.45 | 56.11 |
| GSMUA_Achr3P30130_001 | Banana | nucleus | 49.57 | 55.29 |
| KRH28374 | Soybean | nucleus | 56.9 | 55.0 |
| KRH77108 | Soybean | nucleus | 57.33 | 54.73 |
| CDY02101 | Canola | nucleus | 56.47 | 54.36 |
| CDY23026 | Canola | nucleus | 55.6 | 53.75 |
| CDX81315 | Canola | nucleus | 54.31 | 53.39 |
| GSMUA_Achr7P26260_001 | Banana | mitochondrion | 48.28 | 52.83 |
| GSMUA_Achr6P07770_001 | Banana | mitochondrion | 41.81 | 52.72 |
| GSMUA_Achr4P14150_001 | Banana | mitochondrion | 48.71 | 52.31 |
| GSMUA_Achr2P13440_001 | Banana | mitochondrion, nucleus, plastid | 44.4 | 49.28 |
| GSMUA_Achr4P32550_001 | Banana | mitochondrion | 40.95 | 45.24 |
| CDY54302 | Canola | cytosol, mitochondrion, nucleus | 27.59 | 43.24 |
| TraesCS4B01G078800.1 | Wheat | nucleus | 40.95 | 41.3 |
| HORVU4Hr1G013380.2 | Barley | nucleus | 40.52 | 41.23 |
| TraesCS4D01G077600.1 | Wheat | mitochondrion, nucleus, plastid | 40.52 | 40.87 |
| TraesCS4A01G236200.1 | Wheat | mitochondrion, nucleus, plastid | 40.95 | 40.77 |
| Os03t0609500-01 | Rice | cytosol, nucleus, plastid | 39.66 | 39.66 |
| KXG38039 | Sorghum | mitochondrion, nucleus, plastid | 39.66 | 37.25 |
| CDY34735 | Canola | nucleus | 29.31 | 36.17 |
| Zm00001d033347_P001 | Maize | mitochondrion, nucleus, plastid | 38.36 | 35.46 |
| CDY42342 | Canola | mitochondrion | 37.5 | 35.22 |
| CDY12617 | Canola | mitochondrion | 37.07 | 34.82 |
| CDY38588 | Canola | cytosol, mitochondrion, nucleus | 32.76 | 31.67 |
| CDX96013 | Canola | mitochondrion | 31.9 | 31.22 |
| CDX91999 | Canola | nucleus | 33.19 | 29.62 |
| CDX74249 | Canola | nucleus | 33.19 | 29.62 |
Protein Annotations
| EnsemblPlants:CDX72636 | EnsemblPlantsGene:GSBRNA2T00100193001 | InterPro:IPR004883 | InterPro:LOB | PANTHER:PTHR31304 | PANTHER:PTHR31304:SF1 |
| PFAM:PF03195 | PFscan:PS50891 | ProteinID:CDX72636 | ProteinID:CDX72636.1 | SEG:seg | UniParc:UPI0004EE5254 |
| MapMan:15.5.24 | : | : | : | : | : |
Description
BnaC07g46580D
Coordinates
chrLK031796:-:2307547..2308701
Molecular Weight (calculated)
25223.5 Da
IEP (calculated)
8.727
GRAVY (calculated)
-0.113
Length
232 amino acids
Sequence
(BLAST)
(BLAST)
001: MSCNGCRVLR KGCSETCILR PCLQWIESAE SQGHATLFVA KFFGRAGLMS FISAVPELNR PALFQSLLFE ACGRTVNPAN GAVGILGAGN WHVCQAAVET
101: VLRGGTLRPI SDLLESPSLI SSNYSSEICN DIGRFSTSRT KLSTSDMKKP PVNRKRSKAE RSESVMDVQL NHGLDLTIPV VPVPLLPPTP FRKVVNGERP
201: GSPSEESVTT SCCENGIIGY NKRERKLLNL FV
101: VLRGGTLRPI SDLLESPSLI SSNYSSEICN DIGRFSTSRT KLSTSDMKKP PVNRKRSKAE RSESVMDVQL NHGLDLTIPV VPVPLLPPTP FRKVVNGERP
201: GSPSEESVTT SCCENGIIGY NKRERKLLNL FV
001: MSCNGCRVLR KGCSETCILR PCLQWIESAE SQGHATVFVA KFFGRAGLMS FISSVPELQR PALFQSLLFE ACGRTVNPVN GAVGMLWTRN WHVCQAAVET
101: VLRGGTLRPI SDLLESPSLM ISCDESSEIW HQDVSRNQTH HCRFSTSRST TEMKDSLVNR KRLKSDSDLD LQVNHGLTLT APAVPVPFLP PSSFCKVVKG
201: DRPGSPSEES VTTSCWENGM RGDNKQKRNK GEKKLLNLFV
101: VLRGGTLRPI SDLLESPSLM ISCDESSEIW HQDVSRNQTH HCRFSTSRST TEMKDSLVNR KRLKSDSDLD LQVNHGLTLT APAVPVPFLP PSSFCKVVKG
201: DRPGSPSEES VTTSCWENGM RGDNKQKRNK GEKKLLNLFV
Arabidopsis Description
LBD39LOB domain-containing protein 39 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZE8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.