Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400064185 | Potato | nucleus | 66.23 | 71.23 |
| Solyc02g092550.2.1 | Tomato | extracellular | 65.79 | 68.81 |
| KRH28374 | Soybean | nucleus | 70.18 | 66.67 |
| KRH77108 | Soybean | nucleus | 70.18 | 65.84 |
| KRH04451 | Soybean | nucleus | 66.23 | 65.65 |
| KRH58049 | Soybean | mitochondrion, nucleus | 65.35 | 65.64 |
| GSMUA_Achr3P18860_001 | Banana | cytosol | 53.95 | 64.74 |
| GSMUA_Achr3P30130_001 | Banana | nucleus | 56.58 | 62.02 |
| GSMUA_Achr4P14150_001 | Banana | mitochondrion | 58.33 | 61.57 |
| CDX69315 | Canola | nucleus | 59.65 | 60.99 |
| Bra011772.1-P | Field mustard | nucleus | 62.28 | 59.92 |
| CDX75662 | Canola | nucleus | 62.28 | 59.92 |
| GSMUA_Achr7P26260_001 | Banana | mitochondrion | 55.26 | 59.43 |
| AT4G37540.1 | Thale cress | nucleus | 61.84 | 58.75 |
| GSMUA_Achr6P07770_001 | Banana | mitochondrion | 47.37 | 58.7 |
| CDX72636 | Canola | mitochondrion, nucleus | 59.65 | 58.62 |
| CDY29564 | Canola | nucleus | 58.77 | 57.76 |
| Bra017831.1-P | Field mustard | nucleus | 58.33 | 57.33 |
| VIT_03s0091g00670.t01 | Wine grape | cytosol | 48.68 | 56.92 |
| CDX81265 | Canola | nucleus | 58.33 | 55.88 |
| GSMUA_Achr2P13440_001 | Banana | mitochondrion, nucleus, plastid | 50.44 | 55.02 |
| VIT_18s0001g09250.t01 | Wine grape | nucleus | 52.19 | 53.6 |
| GSMUA_Achr4P32550_001 | Banana | mitochondrion | 47.81 | 51.9 |
| Os03t0609500-01 | Rice | cytosol, nucleus, plastid | 46.49 | 45.69 |
| TraesCS4B01G078800.1 | Wheat | nucleus | 45.61 | 45.22 |
| HORVU4Hr1G013380.2 | Barley | nucleus | 45.18 | 45.18 |
| TraesCS4D01G077600.1 | Wheat | mitochondrion, nucleus, plastid | 45.18 | 44.78 |
| TraesCS4A01G236200.1 | Wheat | mitochondrion, nucleus, plastid | 45.61 | 44.64 |
| KXG38039 | Sorghum | mitochondrion, nucleus, plastid | 46.49 | 42.91 |
| Zm00001d033347_P001 | Maize | mitochondrion, nucleus, plastid | 44.74 | 40.64 |
| VIT_01s0011g03540.t01 | Wine grape | nucleus | 40.35 | 36.36 |
| VIT_14s0006g02950.t01 | Wine grape | mitochondrion | 42.11 | 33.92 |
| VIT_17s0000g03720.t01 | Wine grape | mitochondrion, nucleus, plastid | 40.35 | 33.82 |
| VIT_01s0011g03530.t01 | Wine grape | cytosol, nucleus, plastid | 33.33 | 31.54 |
Protein Annotations
| EntrezGene:100261250 | wikigene:100261250 | MapMan:15.5.24 | ProteinID:CBI33710 | ProteinID:CBI33710.3 | UniProt:D7TT88 |
| EMBL:FN596246 | InterPro:IPR004883 | InterPro:LOB | EntrezGene:LOC100261250 | wikigene:LOC100261250 | PFAM:PF03195 |
| PFscan:PS50891 | PANTHER:PTHR31304 | PANTHER:PTHR31304:SF1 | TIGR:TC60668 | UniParc:UPI00015C946F | ArrayExpress:VIT_07s0129g00330 |
| EnsemblPlantsGene:VIT_07s0129g00330 | EnsemblPlants:VIT_07s0129g00330.t01 | unigene:Vvi.7626 | RefSeq:XP_002284296 | RefSeq:XP_002284296.1 | SEG:seg |
Description
No Description!
Coordinates
chr7:+:15589344..15590603
Molecular Weight (calculated)
24834.9 Da
IEP (calculated)
8.041
GRAVY (calculated)
-0.266
Length
228 amino acids
Sequence
(BLAST)
(BLAST)
001: MSCNGCRVLR KGCSESCILR PCLQWIESAE SQGHATVFVA KFFGRAGLMS FISAVPENQR PALFRSLLYE ACGRTVNPVN GAVGLLGTGN WHVCQAAMET
101: VLRGGTLRAM PELLNGVSTP ECDEASEAEV TCTDMFKLRD PNSSSRSKVP KRKRLEEASK VQCTDLDLRL TPGLTGKISS RGLGAMSYLP ETRRPGTPSM
201: NSEESVTTTC FETPHSPEGE RKLLNLFL
101: VLRGGTLRAM PELLNGVSTP ECDEASEAEV TCTDMFKLRD PNSSSRSKVP KRKRLEEASK VQCTDLDLRL TPGLTGKISS RGLGAMSYLP ETRRPGTPSM
201: NSEESVTTTC FETPHSPEGE RKLLNLFL
001: MSCNGCRVLR KGCSENCILR PCIQWIESPE AQGHATVFVA KFFGRAGLMS FISAVPESQC PALFQSLLYE ACGRTVNPVN GAVGLLWTGN WNVCQAAVET
101: VLRGGSLKPI PELLNGGGFA GFPSPTSDEA SEICTEMLNL RKADDSGDRN IYHHCRFSSS RSRSRSTASP PKRKRLSSEQ QPSSELDLSL IPIYPIKTLP
201: FKEDTPSMYS EESVTTVSFQ NNNAGDRYVR CGGGGGGATT KLLNLFA
101: VLRGGSLKPI PELLNGGGFA GFPSPTSDEA SEICTEMLNL RKADDSGDRN IYHHCRFSSS RSRSRSTASP PKRKRLSSEQ QPSSELDLSL IPIYPIKTLP
201: FKEDTPSMYS EESVTTVSFQ NNNAGDRYVR CGGGGGGATT KLLNLFA
Arabidopsis Description
LBD38LOB domain-containing protein 38 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN23]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.