Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G077600.1 | Wheat | mitochondrion, nucleus, plastid | 97.39 | 97.39 |
| HORVU4Hr1G013380.2 | Barley | nucleus | 95.65 | 96.49 |
| TraesCS4A01G236200.1 | Wheat | mitochondrion, nucleus, plastid | 96.96 | 95.71 |
| Os03t0609500-01 | Rice | cytosol, nucleus, plastid | 79.57 | 78.88 |
| KXG38039 | Sorghum | mitochondrion, nucleus, plastid | 77.39 | 72.06 |
| Zm00001d033347_P001 | Maize | mitochondrion, nucleus, plastid | 73.04 | 66.93 |
| KRH05602 | Soybean | nucleus | 15.22 | 57.38 |
| GSMUA_Achr2P13440_001 | Banana | mitochondrion, nucleus, plastid | 50.0 | 55.02 |
| GSMUA_Achr4P32550_001 | Banana | mitochondrion | 44.78 | 49.05 |
| CDY37852 | Canola | nucleus | 43.91 | 46.54 |
| CDY58550 | Canola | nucleus | 43.91 | 46.54 |
| PGSC0003DMT400064185 | Potato | nucleus | 42.61 | 46.23 |
| KRH35680 | Soybean | cytosol, mitochondrion, nucleus | 34.35 | 46.2 |
| KRG91097 | Soybean | mitochondrion, nucleus, plasma membrane | 34.35 | 46.2 |
| CDY43575 | Canola | nucleus | 43.91 | 45.7 |
| VIT_07s0129g00330.t01 | Wine grape | nucleus | 45.22 | 45.61 |
| Solyc02g092550.2.1 | Tomato | extracellular | 43.04 | 45.41 |
| KRH58049 | Soybean | mitochondrion, nucleus | 44.78 | 45.37 |
| CDY67844 | Canola | nucleus | 44.78 | 45.37 |
| KRH04451 | Soybean | nucleus | 45.22 | 45.22 |
| CDY67455 | Canola | nucleus | 44.78 | 45.18 |
| CDX69315 | Canola | nucleus | 43.48 | 44.84 |
| CDY17741 | Canola | nucleus | 42.17 | 44.29 |
| KRH15442 | Soybean | mitochondrion, nucleus | 32.61 | 43.86 |
| VIT_03s0091g00670.t01 | Wine grape | cytosol | 36.96 | 43.59 |
| CDX81315 | Canola | nucleus | 43.91 | 42.8 |
| Bra037847.1-P | Field mustard | nucleus | 43.91 | 42.8 |
| Bra011772.1-P | Field mustard | nucleus | 43.91 | 42.62 |
| CDX75662 | Canola | nucleus | 43.91 | 42.62 |
| AT4G37540.1 | Thale cress | nucleus | 44.35 | 42.5 |
| Bra031833.1-P | Field mustard | nucleus | 44.35 | 42.32 |
| AT5G67420.2 | Thale cress | nucleus | 45.65 | 42.0 |
| KRH28374 | Soybean | nucleus | 43.48 | 41.67 |
| Bra017831.1-P | Field mustard | nucleus | 41.74 | 41.38 |
| CDY29564 | Canola | nucleus | 41.74 | 41.38 |
| CDY23026 | Canola | nucleus | 43.04 | 41.25 |
| Bra036040.1-P | Field mustard | nucleus | 43.91 | 41.22 |
| KRH61393 | Soybean | nucleus | 33.04 | 41.08 |
| Bra012913.1-P | Field mustard | nucleus | 43.04 | 41.08 |
| PGSC0003DMT400066165 | Potato | mitochondrion, nucleus | 38.7 | 41.01 |
| Solyc01g107190.2.1 | Tomato | mitochondrion, nucleus | 38.7 | 41.01 |
| CDX72636 | Canola | mitochondrion, nucleus | 41.3 | 40.95 |
| AT3G49940.1 | Thale cress | nucleus | 43.91 | 40.89 |
| KRH77108 | Soybean | nucleus | 43.04 | 40.74 |
| CDY02101 | Canola | nucleus | 42.61 | 40.66 |
| Bra012164.1-P | Field mustard | nucleus | 45.22 | 40.62 |
| CDX81265 | Canola | nucleus | 41.74 | 40.34 |
| TraesCS2B01G212400.1 | Wheat | plastid | 40.87 | 39.66 |
| PGSC0003DMT400055393 | Potato | nucleus | 34.78 | 39.22 |
| Solyc04g077990.2.1 | Tomato | nucleus, plasma membrane, plastid | 34.78 | 39.22 |
| VIT_18s0001g09250.t01 | Wine grape | nucleus | 36.96 | 38.29 |
| KRH05603 | Soybean | cytosol, extracellular | 15.22 | 33.02 |
| TraesCS4B01G361200.1 | Wheat | nucleus | 34.35 | 28.52 |
| TraesCS3B01G106900.1 | Wheat | cytosol, mitochondrion, nucleus | 35.65 | 27.8 |
| TraesCS4B01G361100.1 | Wheat | cytosol, nucleus, plastid | 33.48 | 26.28 |
| TraesCS2B01G289800.1 | Wheat | nucleus | 33.04 | 25.17 |
Protein Annotations
| EnsemblPlants:TraesCS4B01G078800.1 | EnsemblPlantsGene:TraesCS4B01G078800 | InterPro:IPR004883 | InterPro:LOB | PANTHER:PTHR31304 | PANTHER:PTHR31304:SF2 |
| PFAM:PF03195 | PFscan:PS50891 | SEG:seg | MapMan:15.5.24 | : | : |
Description
No Description!
Coordinates
chr4B:-:75778248..75779728
Molecular Weight (calculated)
23670.0 Da
IEP (calculated)
7.566
GRAVY (calculated)
-0.050
Length
230 amino acids
Sequence
(BLAST)
(BLAST)
001: MSCNGCRVLR KGCSDACVLR PSIEWIDGAQ PQANATVFVA KFFGRAGLVA SLAAVPLHHR PALFRSLLYE ACGRTINPVS GAIGLMWTSN WDLCQAAADA
101: VLRGDSLRSL SAVPAAFTER DMAGLYGNVG TNTGSSSSLH SSPENSTSAP ARKRSKNNPG CGAAGGQQVK LPGPVLPSCD LDLCLTPLSS PLAGGRRGGA
201: SDEYSTTTCC EDASGDAAEA GAPPLLNLFN
101: VLRGDSLRSL SAVPAAFTER DMAGLYGNVG TNTGSSSSLH SSPENSTSAP ARKRSKNNPG CGAAGGQQVK LPGPVLPSCD LDLCLTPLSS PLAGGRRGGA
201: SDEYSTTTCC EDASGDAAEA GAPPLLNLFN
001: MSCNGCRVLR KGCSETCILR PCLQWIESAE SQGHATVFVA KFFGRAGLMS FISSVPELQR PALFQSLLFE ACGRTVNPVN GAVGMLWTRN WHVCQAAVET
101: VLRGGTLRPI SDLLESPSLM ISCDESSEIW HQDVSRNQTH HCRFSTSRST TEMKDSLVNR KRLKSDSDLD LQVNHGLTLT APAVPVPFLP PSSFCKVVKG
201: DRPGSPSEES VTTSCWENGM RGDNKQKRNK GEKKLLNLFV
101: VLRGGTLRPI SDLLESPSLM ISCDESSEIW HQDVSRNQTH HCRFSTSRST TEMKDSLVNR KRLKSDSDLD LQVNHGLTLT APAVPVPFLP PSSFCKVVKG
201: DRPGSPSEES VTTSCWENGM RGDNKQKRNK GEKKLLNLFV
Arabidopsis Description
LBD39LOB domain-containing protein 39 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZE8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.