Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY37852 | Canola | nucleus | 98.16 | 98.16 |
| CDY43575 | Canola | nucleus | 95.85 | 94.12 |
| Bra031833.1-P | Field mustard | nucleus | 98.16 | 88.38 |
| CDY67455 | Canola | nucleus | 87.56 | 83.33 |
| CDY67844 | Canola | nucleus | 87.1 | 83.26 |
| CDX81315 | Canola | nucleus | 81.11 | 74.58 |
| AT5G67420.2 | Thale cress | nucleus | 84.79 | 73.6 |
| CDY17741 | Canola | nucleus | 72.81 | 72.15 |
| GSMUA_Achr3P18860_001 | Banana | cytosol | 57.14 | 65.26 |
| CDY02101 | Canola | nucleus | 71.43 | 64.32 |
| CDY23026 | Canola | nucleus | 70.97 | 64.17 |
| PGSC0003DMT400064185 | Potato | nucleus | 61.75 | 63.21 |
| Solyc02g092550.2.1 | Tomato | extracellular | 61.29 | 61.01 |
| CDX69315 | Canola | nucleus | 61.75 | 60.09 |
| GSMUA_Achr3P30130_001 | Banana | nucleus | 55.76 | 58.17 |
| GSMUA_Achr4P14150_001 | Banana | mitochondrion | 57.6 | 57.87 |
| CDX75662 | Canola | nucleus | 62.21 | 56.96 |
| GSMUA_Achr7P26260_001 | Banana | mitochondrion | 55.3 | 56.6 |
| GSMUA_Achr6P07770_001 | Banana | mitochondrion | 47.47 | 55.98 |
| CDX81265 | Canola | nucleus | 58.53 | 53.36 |
| GSMUA_Achr2P13440_001 | Banana | mitochondrion, nucleus, plastid | 51.15 | 53.11 |
| CDX72636 | Canola | mitochondrion, nucleus | 56.68 | 53.02 |
| CDY29564 | Canola | nucleus | 56.22 | 52.59 |
| GSMUA_Achr4P32550_001 | Banana | mitochondrion | 49.31 | 50.95 |
| Os03t0609500-01 | Rice | cytosol, nucleus, plastid | 48.85 | 45.69 |
| TraesCS4D01G077600.1 | Wheat | mitochondrion, nucleus, plastid | 47.0 | 44.35 |
| HORVU4Hr1G013380.2 | Barley | nucleus | 46.54 | 44.3 |
| TraesCS4A01G236200.1 | Wheat | mitochondrion, nucleus, plastid | 47.47 | 44.21 |
| TraesCS4B01G078800.1 | Wheat | nucleus | 46.54 | 43.91 |
| KXG38039 | Sorghum | mitochondrion, nucleus, plastid | 49.31 | 43.32 |
| CDY54302 | Canola | cytosol, mitochondrion, nucleus | 28.57 | 41.89 |
| Zm00001d033347_P001 | Maize | mitochondrion, nucleus, plastid | 46.08 | 39.84 |
| CDY34735 | Canola | nucleus | 32.26 | 37.23 |
| CDY42342 | Canola | mitochondrion | 40.55 | 35.63 |
| CDY12617 | Canola | mitochondrion | 40.55 | 35.63 |
| CDX91999 | Canola | nucleus | 38.25 | 31.92 |
| CDX74249 | Canola | nucleus | 38.25 | 31.92 |
| CDY38588 | Canola | cytosol, mitochondrion, nucleus | 34.56 | 31.25 |
| CDX96013 | Canola | mitochondrion | 33.64 | 30.8 |
Protein Annotations
| EnsemblPlants:CDY58550 | EnsemblPlantsGene:GSBRNA2T00024836001 | InterPro:IPR004883 | InterPro:LOB | PANTHER:PTHR31304 | PANTHER:PTHR31304:SF1 |
| PFAM:PF03195 | PFscan:PS50891 | ProteinID:CDY58550 | ProteinID:CDY58550.1 | SEG:seg | UniParc:UPI0004EEBF75 |
| UniProt:A0A078J603 | MapMan:15.5.24 | : | : | : | : |
Description
BnaAnng15250DBnaAnng15250D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J603]
Coordinates
chrLK033678:-:18672..19850
Molecular Weight (calculated)
23178.5 Da
IEP (calculated)
8.708
GRAVY (calculated)
-0.255
Length
217 amino acids
Sequence
(BLAST)
(BLAST)
001: MSCNGCRVLR KGCSENCILR PCIQWIETAD AQGHATVFVA KFFGRAGLMS FISAVPEPQR PALFQSLLYE ACGRTVNPVN GAIGMLWTGN WNICQAAVET
101: VLRGGSLRPI PGLLAHGGGF AGFPSVTSEE GSRSRSTLDS SAKKRKRVDS SELDLSLNPN LSTKTTPSPT RQRSGTPSMN SEESVATTTS FWDATATGER
201: YGNGGGGETR QLLNLFV
101: VLRGGSLRPI PGLLAHGGGF AGFPSVTSEE GSRSRSTLDS SAKKRKRVDS SELDLSLNPN LSTKTTPSPT RQRSGTPSMN SEESVATTTS FWDATATGER
201: YGNGGGGETR QLLNLFV
001: MRMSCNGCRV LRKGCSENCS IRPCLQWIKS AESQANATVF LAKFYGRAGL MNLLNTGPDH LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GNWHLCQAAV
101: EAVMRGSPVT PIACDAAVTG QAPPFNNKLC DIRHVSSRDE NVKRRSRGAC KEERNVRSLS HESSLSHESP VSSEETTTEE PKTWIGLELT LGLEPLARGN
201: HVVVPMKKRK LERCGTSEDE DTCKIELGLV CSE
101: EAVMRGSPVT PIACDAAVTG QAPPFNNKLC DIRHVSSRDE NVKRRSRGAC KEERNVRSLS HESSLSHESP VSSEETTTEE PKTWIGLELT LGLEPLARGN
201: HVVVPMKKRK LERCGTSEDE DTCKIELGLV CSE
Arabidopsis Description
LBD40LOB domain-containing protein 40 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZW96]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.