CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
mitochondrion 4
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY12617	Canola	mitochondrion	98.79	98.79
AT1G67100.1	Thale cress	mitochondrion	81.78	86.7
CDY34735	Canola	nucleus	50.2	65.96
CDY54302	Canola	cytosol, mitochondrion, nucleus	36.03	60.14
GSMUA_Achr4P13790_001	Banana	mitochondrion	55.06	58.62
CDX74249	Canola	nucleus	61.54	58.46
CDX91999	Canola	nucleus	61.13	58.08
GSMUA_Achr4P06820_001	Banana	cytosol, mitochondrion, plastid	53.44	56.41
GSMUA_Achr9P21360_001	Banana	mitochondrion	50.2	55.36
KRG93864	Soybean	nucleus	65.18	54.95
KRH18248	Soybean	nucleus	63.97	54.86
VIT_14s0006g02950.t01	Wine grape	mitochondrion	58.7	51.24
CDX96013	Canola	mitochondrion	43.32	45.15
CDY38588	Canola	cytosol, mitochondrion, nucleus	43.32	44.58
CDY37852	Canola	nucleus	35.63	40.55
CDY58550	Canola	nucleus	35.63	40.55
CDX69315	Canola	nucleus	36.44	40.36
CDY43575	Canola	nucleus	35.63	39.82
GSMUA_Achr4P03700_001	Banana	cytosol, mitochondrion, nucleus	51.42	38.96
CDY17741	Canola	nucleus	34.41	38.81
CDX75662	Canola	nucleus	36.44	37.97
CDY67844	Canola	nucleus	34.82	37.89
CDY67455	Canola	nucleus	34.82	37.72
CDX72636	Canola	mitochondrion, nucleus	35.22	37.5
CDX81315	Canola	nucleus	35.63	37.29
CDY29564	Canola	nucleus	34.82	37.07
CDY02101	Canola	nucleus	35.63	36.51
CDX81265	Canola	nucleus	34.82	36.13
CDY23026	Canola	nucleus	34.82	35.83
Os01t0129600-00	Rice	cytosol	34.01	24.78

Protein Annotations

EnsemblPlants:CDY42342	EnsemblPlantsGene:GSBRNA2T00074606001	InterPro:IPR004883	InterPro:LOB	PANTHER:PTHR31304	PANTHER:PTHR31304:SF9
PFAM:PF03195	PFscan:PS50891	ProteinID:CDY42342	ProteinID:CDY42342.1	SEG:seg	UniParc:UPI0001EED197
UniProt:A0A078HWZ5	MapMan:15.5.24	:	:	:	:

Description

BnaC02g17190DBnaC02g17190D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HWZ5]

Coordinates

chrLK032521:+:240564..241926

Molecular Weight (calculated)

26715.9 Da

IEP (calculated)

8.122

GRAVY (calculated)

-0.240

Length

247 amino acids

Sequence
(BLAST)

001: MRMSCNGCRV LRKGCSENCS IRPCLQWIKS AESQANATVF LAKFYGRAGL MNLLSTGPDH LRPAIFRSLL YEACGRIVNP IYGSVGILWS GNWHLCQAAV
101: EAVMRGSPVT PIACDAAVTG QAPPFNNNKL FDIRHVSRDE NAVKSRCRSS RSGACKEGRN VRSSLSHESS LSHESAVVKG EGSMVSSEET TEEPSWIGLE
201: LTLGLEPSGA RGSHVVVPIK KRKLEKSGTC DDDADTCKIE LGLVCSE

Best Arabidopsis Sequence Match ( AT1G67100.1 )
(BLAST)

001: MRMSCNGCRV LRKGCSENCS IRPCLQWIKS AESQANATVF LAKFYGRAGL MNLLNTGPDH LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GNWHLCQAAV
101: EAVMRGSPVT PIACDAAVTG QAPPFNNKLC DIRHVSSRDE NVKRRSRGAC KEERNVRSLS HESSLSHESP VSSEETTTEE PKTWIGLELT LGLEPLARGN
201: HVVVPMKKRK LERCGTSEDE DTCKIELGLV CSE

Arabidopsis Description

LBD40LOB domain-containing protein 40 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZW96]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.