Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY58550 | Canola | nucleus | 94.12 | 95.85 |
| CDY37852 | Canola | nucleus | 92.31 | 94.01 |
| Bra031833.1-P | Field mustard | nucleus | 92.31 | 84.65 |
| CDY67844 | Canola | nucleus | 85.97 | 83.7 |
| CDY67455 | Canola | nucleus | 85.52 | 82.89 |
| AT5G67420.2 | Thale cress | nucleus | 84.62 | 74.8 |
| CDX81315 | Canola | nucleus | 78.73 | 73.73 |
| CDY17741 | Canola | nucleus | 71.04 | 71.69 |
| CDY02101 | Canola | nucleus | 70.59 | 64.73 |
| CDY23026 | Canola | nucleus | 70.14 | 64.58 |
| PGSC0003DMT400064185 | Potato | nucleus | 61.54 | 64.15 |
| GSMUA_Achr3P18860_001 | Banana | cytosol | 54.75 | 63.68 |
| Solyc02g092550.2.1 | Tomato | extracellular | 61.09 | 61.93 |
| GSMUA_Achr4P14150_001 | Banana | mitochondrion | 57.47 | 58.8 |
| CDX69315 | Canola | nucleus | 59.28 | 58.74 |
| GSMUA_Achr3P30130_001 | Banana | nucleus | 54.75 | 58.17 |
| CDX75662 | Canola | nucleus | 61.09 | 56.96 |
| GSMUA_Achr7P26260_001 | Banana | mitochondrion | 54.3 | 56.6 |
| GSMUA_Achr6P07770_001 | Banana | mitochondrion | 47.06 | 56.52 |
| CDY29564 | Canola | nucleus | 56.11 | 53.45 |
| CDX72636 | Canola | mitochondrion, nucleus | 56.11 | 53.45 |
| CDX81265 | Canola | nucleus | 57.01 | 52.94 |
| GSMUA_Achr2P13440_001 | Banana | mitochondrion, nucleus, plastid | 49.77 | 52.63 |
| GSMUA_Achr4P32550_001 | Banana | mitochondrion | 47.06 | 49.52 |
| Os03t0609500-01 | Rice | cytosol, nucleus, plastid | 46.61 | 44.4 |
| TraesCS4D01G077600.1 | Wheat | mitochondrion, nucleus, plastid | 46.15 | 44.35 |
| HORVU4Hr1G013380.2 | Barley | nucleus | 45.7 | 44.3 |
| TraesCS4A01G236200.1 | Wheat | mitochondrion, nucleus, plastid | 46.61 | 44.21 |
| TraesCS4B01G078800.1 | Wheat | nucleus | 45.7 | 43.91 |
| KXG38039 | Sorghum | mitochondrion, nucleus, plastid | 47.51 | 42.51 |
| CDY54302 | Canola | cytosol, mitochondrion, nucleus | 27.6 | 41.22 |
| Zm00001d033347_P001 | Maize | mitochondrion, nucleus, plastid | 44.8 | 39.44 |
| CDY34735 | Canola | nucleus | 31.67 | 37.23 |
| CDY42342 | Canola | mitochondrion | 39.82 | 35.63 |
| CDY12617 | Canola | mitochondrion | 39.82 | 35.63 |
| CDX91999 | Canola | nucleus | 37.1 | 31.54 |
| CDX74249 | Canola | nucleus | 37.1 | 31.54 |
| CDY38588 | Canola | cytosol, mitochondrion, nucleus | 33.48 | 30.83 |
| CDX96013 | Canola | mitochondrion | 32.58 | 30.38 |
Protein Annotations
| EnsemblPlants:CDY43575 | EnsemblPlantsGene:GSBRNA2T00076878001 | InterPro:IPR004883 | InterPro:LOB | PANTHER:PTHR31304 | PANTHER:PTHR31304:SF1 |
| PFAM:PF03195 | PFscan:PS50891 | ProteinID:CDY43575 | ProteinID:CDY43575.1 | SEG:seg | UniParc:UPI0004EEE7A9 |
| UniProt:A0A078HYI1 | MapMan:15.5.24 | : | : | : | : |
Description
BnaC02g16720DBnaC02g16720D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HYI1]
Coordinates
chrLK032561:-:195742..196976
Molecular Weight (calculated)
23484.9 Da
IEP (calculated)
8.780
GRAVY (calculated)
-0.253
Length
221 amino acids
Sequence
(BLAST)
(BLAST)
001: MSCNGCRVLR KGCSENCILR PCIQWIETAD AQGHATVFVA KFFGRAGLMS FISAVPESQR PALFQSLLYE ACGRTVNPVN GAIGMLWTGN WNICQAAVET
101: VLRGGSLRPI PGLLAHGGGF AGFPSVTSEE GSRSRSTLDS SPKKRRRVDS SELDLSLNPN LSTKTTPSPT RQRSGTPSMN SEESVATTTT TTTSFCDATP
201: TGERYGNGGG GEASKLLKLF V
101: VLRGGSLRPI PGLLAHGGGF AGFPSVTSEE GSRSRSTLDS SPKKRRRVDS SELDLSLNPN LSTKTTPSPT RQRSGTPSMN SEESVATTTT TTTSFCDATP
201: TGERYGNGGG GEASKLLKLF V
001: MRMSCNGCRV LRKGCSENCS IRPCLQWIKS AESQANATVF LAKFYGRAGL MNLLNTGPDH LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GNWHLCQAAV
101: EAVMRGSPVT PIACDAAVTG QAPPFNNKLC DIRHVSSRDE NVKRRSRGAC KEERNVRSLS HESSLSHESP VSSEETTTEE PKTWIGLELT LGLEPLARGN
201: HVVVPMKKRK LERCGTSEDE DTCKIELGLV CSE
101: EAVMRGSPVT PIACDAAVTG QAPPFNNKLC DIRHVSSRDE NVKRRSRGAC KEERNVRSLS HESSLSHESP VSSEETTTEE PKTWIGLELT LGLEPLARGN
201: HVVVPMKKRK LERCGTSEDE DTCKIELGLV CSE
Arabidopsis Description
LBD40LOB domain-containing protein 40 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZW96]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.