Factsheet for GSMUA_Achr4P14150_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 4
mitochondrion 3
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P30130_001	Banana	nucleus	78.7	81.73
GSMUA_Achr7P26260_001	Banana	mitochondrion	72.22	73.58
KRH05602	Soybean	nucleus	20.37	72.13
GSMUA_Achr3P18860_001	Banana	cytosol	62.96	71.58
GSMUA_Achr2P22720_001	Banana	cytosol, mitochondrion, nucleus	28.24	67.03
GSMUA_Achr6P07770_001	Banana	mitochondrion	54.63	64.13
PGSC0003DMT400064185	Potato	nucleus	61.11	62.26
Solyc02g092550.2.1	Tomato	extracellular	61.11	60.55
GSMUA_Achr2P13440_001	Banana	mitochondrion, nucleus, plastid	57.87	59.81
CDY17741	Canola	nucleus	60.19	59.36
CDY37852	Canola	nucleus	59.26	58.99
VIT_07s0129g00330.t01	Wine grape	nucleus	61.57	58.33
KRG91097	Soybean	mitochondrion, nucleus, plasma membrane	45.83	57.89
CDY58550	Canola	nucleus	57.87	57.6
CDY43575	Canola	nucleus	58.8	57.47
CDY67844	Canola	nucleus	60.19	57.27
GSMUA_Achr4P32550_001	Banana	mitochondrion	55.56	57.14
CDY67455	Canola	nucleus	59.72	56.58
KRH35680	Soybean	cytosol, mitochondrion, nucleus	44.44	56.14
KRH04451	Soybean	nucleus	58.8	55.22
Bra012913.1-P	Field mustard	nucleus	61.57	55.19
KRH15442	Soybean	mitochondrion, nucleus	43.52	54.97
CDY02101	Canola	nucleus	61.11	54.77
KRH58049	Soybean	mitochondrion, nucleus	57.41	54.63
CDY23026	Canola	nucleus	60.65	54.58
Bra036040.1-P	Field mustard	nucleus	61.11	53.88
Bra031833.1-P	Field mustard	nucleus	59.72	53.53
CDX81315	Canola	nucleus	58.33	53.39
Bra037847.1-P	Field mustard	nucleus	58.33	53.39
AT3G49940.1	Thale cress	nucleus	60.65	53.04
KRH28374	Soybean	nucleus	58.8	52.92
AT5G67420.2	Thale cress	nucleus	61.11	52.8
KRH77108	Soybean	nucleus	59.26	52.67
Solyc01g107190.2.1	Tomato	mitochondrion, nucleus	52.78	52.53
PGSC0003DMT400066165	Potato	mitochondrion, nucleus	52.31	52.07
CDX69315	Canola	nucleus	53.7	52.02
Bra012164.1-P	Field mustard	nucleus	61.57	51.95
VIT_03s0091g00670.t01	Wine grape	cytosol	46.76	51.79
Bra011772.1-P	Field mustard	nucleus	56.02	51.05
CDX75662	Canola	nucleus	56.02	51.05
AT4G37540.1	Thale cress	nucleus	56.48	50.83
KRH61393	Soybean	nucleus	43.52	50.81
CDY29564	Canola	nucleus	52.78	49.14
Bra017831.1-P	Field mustard	nucleus	52.31	48.71
CDX72636	Canola	mitochondrion, nucleus	52.31	48.71
CDX81265	Canola	nucleus	53.24	48.32
VIT_18s0001g09250.t01	Wine grape	nucleus	49.07	47.75
Solyc04g077990.2.1	Tomato	nucleus, plasma membrane, plastid	43.52	46.08
PGSC0003DMT400055393	Potato	nucleus	43.06	45.59
KRH05603	Soybean	cytosol, extracellular	20.37	41.51
GSMUA_Achr3P29520_001	Banana	mitochondrion	40.74	37.77
GSMUA_Achr9P00580_001	Banana	mitochondrion	40.28	37.18
GSMUA_Achr4P13790_001	Banana	mitochondrion	39.81	37.07
GSMUA_Achr9P21360_001	Banana	mitochondrion	38.43	37.05
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plastid	38.89	36.84
GSMUA_Achr4P06820_001	Banana	cytosol, mitochondrion, plastid	39.81	36.75
GSMUA_Achr2P14600_001	Banana	mitochondrion	37.5	33.75
GSMUA_Achr1P20970_001	Banana	mitochondrion	38.89	33.47
GSMUA_Achr4P03700_001	Banana	cytosol, mitochondrion, nucleus	37.96	25.15

Protein Annotations

EnsemblPlants:GSMUA_Achr4P14150_001	EnsemblPlants:GSMUA_Achr4T14150_001	EnsemblPlantsGene:GSMUA_Achr4G14150_001	InterPro:IPR004883	InterPro:LOB	ncoils:Coil
PANTHER:PTHR31304	PANTHER:PTHR31304:SF1	PFAM:PF03195	PFscan:PS50891	SEG:seg	UniParc:UPI000295B31F
UniProt:M0SNT0	MapMan:15.5.24	:	:	:	:

Description

LOB domain-containing protein 37 [Source:GMGC_GENE;Acc:GSMUA_Achr4G14150_001]

Coordinates

chr4:+:10593153..10594093

Molecular Weight (calculated)

22998.4 Da

IEP (calculated)

8.426

GRAVY (calculated)

-0.201

Length

216 amino acids

Sequence
(BLAST)

001: MSCNGCRILR RGCSDSCLLR PCLQWIDSAE AQAHATVFVA KFFGRAGLMS FISAVPSSQR PGLFQSLLYE ACGRTINPVN GAVGLLWTGN WHLCQAAVET
101: VLRGGALRPL PNLAAEAHGG GAMPEADGLC PPPRMGFSSF SSAKRRRAPA PSKADYAAAC DLDLCLTPRS PRSEREDKRR RPATPSMNSE GSVTTSAESD
201: GGDRSAVEPT LLNLFT

Best Arabidopsis Sequence Match ( AT5G67420.1 )
(BLAST)

001: MSCNGCRVLR KGCSENCILR PCIQWIETAD AQGHATVFVA KFFGRAGLMS FISAVPDSQR PALFQSLLYE ACGRTVNPVN GAIGMLWTGN WNICQAAVET
101: VLRGGSLRPI PELLTHGGGF AGFPSPTSEE ASEICTEMLN LQQNDSTDRN IYHHSRFSSS RSRSTMDSSS PTKRKRLSSE DQPSSELDLS LIPNFPIKQA
201: TPSSTRRRSV TPSMNSEDSG TTTTTTAFCD KGDVYGNGGG ETTKLLNLFV

Arabidopsis Description

LBD37LOB domain-containing protein 37 [Source:UniProtKB/Swiss-Prot;Acc:Q9FN11]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.