Factsheet for Bra036040.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY17741	Canola	nucleus	85.31	95.43
Bra012913.1-P	Field mustard	nucleus	86.53	87.97
AT3G49940.1	Thale cress	nucleus	81.22	80.57
Bra031833.1-P	Field mustard	nucleus	72.24	73.44
Bra012164.1-P	Field mustard	nucleus	76.73	73.44
Bra037847.1-P	Field mustard	nucleus	70.2	72.88
PGSC0003DMT400064185	Potato	nucleus	55.51	64.15
GSMUA_Achr3P18860_001	Banana	cytosol	49.39	63.68
Solyc02g092550.2.1	Tomato	extracellular	55.92	62.84
GSMUA_Achr3P30130_001	Banana	nucleus	52.24	61.54
GSMUA_Achr4P14150_001	Banana	mitochondrion	53.88	61.11
GSMUA_Achr7P26260_001	Banana	mitochondrion	50.2	58.02
GSMUA_Achr2P13440_001	Banana	mitochondrion, nucleus, plastid	49.39	57.89
Bra011772.1-P	Field mustard	nucleus	55.51	57.38
GSMUA_Achr6P07770_001	Banana	mitochondrion	42.86	57.07
Bra017831.1-P	Field mustard	nucleus	53.47	56.47
GSMUA_Achr4P32550_001	Banana	mitochondrion	46.12	53.81
TraesCS4A01G236200.1	Wheat	mitochondrion, nucleus, plastid	42.45	44.64
Os03t0609500-01	Rice	cytosol, nucleus, plastid	42.04	44.4
TraesCS4D01G077600.1	Wheat	mitochondrion, nucleus, plastid	41.63	44.35
TraesCS4B01G078800.1	Wheat	nucleus	41.22	43.91
HORVU4Hr1G013380.2	Barley	nucleus	40.82	43.86
KXG38039	Sorghum	mitochondrion, nucleus, plastid	42.86	42.51
Zm00001d033347_P001	Maize	mitochondrion, nucleus, plastid	40.0	39.04
Bra004315.1-P	Field mustard	mitochondrion	31.84	32.91
Bra021433.1-P	Field mustard	nucleus	33.88	31.44

Protein Annotations

EnsemblPlants:Bra036040.1	EnsemblPlants:Bra036040.1-P	EnsemblPlantsGene:Bra036040	InterPro:IPR004883	InterPro:LOB	PANTHER:PTHR31304
PANTHER:PTHR31304:SF1	PFAM:PF03195	PFscan:PS50891	SEG:seg	UniParc:UPI0002542B01	UniProt:M4F4P0
MapMan:15.5.24	:	:	:	:	:

Description

AT3G49940 (E=7e-101) LBD38 | LBD38 (LOB DOMAIN-CONTAINING PROTEIN 38)

Coordinates

chrA09:+:24873579..24874625

Molecular Weight (calculated)

26700.7 Da

IEP (calculated)

7.198

GRAVY (calculated)

-0.249

Length

245 amino acids

Sequence
(BLAST)

001: MSCNGCRVLR KGCSESCILR PCIQWIESAE AQGHATVFVA KFFGRAGLMS FISSVPESQS PALFQSLLYE ACGRTVNPVN GAVGLLWTGN WSICQAAVET
101: VLRGGSLRPM PELLTRDGGF GGFPSTTSDE ASEICTEMLN DCGDRSAYHH CRFSSSRTSR PTASPPNRKR LASEQQQRQS SELDLSLLPT FPIKTTPLKE
201: ETVRPETPSM YSGESVTTTP FMDNIAGERF VRVGGETTKL LNLFA

Best Arabidopsis Sequence Match ( AT3G49940.1 )
(BLAST)

001: MSCNGCRVLR KGCSENCILR PCIQWIESPE AQGHATVFVA KFFGRAGLMS FISAVPESQC PALFQSLLYE ACGRTVNPVN GAVGLLWTGN WNVCQAAVET
101: VLRGGSLKPI PELLNGGGFA GFPSPTSDEA SEICTEMLNL RKADDSGDRN IYHHCRFSSS RSRSRSTASP PKRKRLSSEQ QPSSELDLSL IPIYPIKTLP
201: FKEDTPSMYS EESVTTVSFQ NNNAGDRYVR CGGGGGGATT KLLNLFA

Arabidopsis Description

LBD38LOB domain-containing protein 38 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN23]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.