Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY02101 | Canola | nucleus | 80.97 | 82.99 |
| Bra012913.1-P | Field mustard | nucleus | 80.57 | 82.57 |
| CDY17741 | Canola | nucleus | 72.06 | 81.28 |
| CDY23026 | Canola | nucleus | 78.95 | 81.25 |
| Bra036040.1-P | Field mustard | nucleus | 80.57 | 81.22 |
| AT5G67420.2 | Thale cress | nucleus | 80.16 | 79.2 |
| PGSC0003DMT400064185 | Potato | nucleus | 55.47 | 64.62 |
| Solyc02g092550.2.1 | Tomato | extracellular | 55.87 | 63.3 |
| GSMUA_Achr3P18860_001 | Banana | cytosol | 48.58 | 63.16 |
| GSMUA_Achr3P30130_001 | Banana | nucleus | 51.82 | 61.54 |
| GSMUA_Achr4P14150_001 | Banana | mitochondrion | 53.04 | 60.65 |
| AT4G37540.1 | Thale cress | nucleus | 58.7 | 60.42 |
| GSMUA_Achr7P26260_001 | Banana | mitochondrion | 50.2 | 58.49 |
| GSMUA_Achr6P07770_001 | Banana | mitochondrion | 43.32 | 58.15 |
| GSMUA_Achr2P13440_001 | Banana | mitochondrion, nucleus, plastid | 48.58 | 57.42 |
| GSMUA_Achr4P32550_001 | Banana | mitochondrion | 45.75 | 53.81 |
| TraesCS4A01G236200.1 | Wheat | mitochondrion, nucleus, plastid | 42.11 | 44.64 |
| TraesCS4D01G077600.1 | Wheat | mitochondrion, nucleus, plastid | 41.3 | 44.35 |
| Os03t0609500-01 | Rice | cytosol, nucleus, plastid | 41.3 | 43.97 |
| TraesCS4B01G078800.1 | Wheat | nucleus | 40.89 | 43.91 |
| HORVU4Hr1G013380.2 | Barley | nucleus | 40.49 | 43.86 |
| KXG38039 | Sorghum | mitochondrion, nucleus, plastid | 42.51 | 42.51 |
| AT1G67100.1 | Thale cress | mitochondrion | 36.84 | 39.06 |
| Zm00001d033347_P001 | Maize | mitochondrion, nucleus, plastid | 39.27 | 38.65 |
| AT1G68510.1 | Thale cress | mitochondrion, nucleus | 30.77 | 32.62 |
| AT3G02550.1 | Thale cress | nucleus | 34.41 | 32.32 |
Protein Annotations
| MapMan:15.5.24 | EntrezGene:824156 | UniProt:A0A178VKG2 | EMBL:AB473873 | ProteinID:AEE78609.1 | ArrayExpress:AT3G49940 |
| EnsemblPlantsGene:AT3G49940 | RefSeq:AT3G49940 | TAIR:AT3G49940 | RefSeq:AT3G49940-TAIR-G | EnsemblPlants:AT3G49940.1 | TAIR:AT3G49940.1 |
| EMBL:AY085761 | EMBL:BT002449 | EMBL:BT006287 | ProteinID:CAB62102.1 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0008150 | InterPro:IPR004883 | Symbol:LBD38 | InterPro:LOB | RefSeq:NP_190563.1 |
| ProteinID:OAP06198.1 | PFAM:PF03195 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025281 | PFscan:PS50891 | PANTHER:PTHR31304 | PANTHER:PTHR31304:SF1 | UniProt:Q9SN23 | UniParc:UPI000000BD82 |
| SEG:seg | : | : | : | : | : |
Description
LBD38LOB domain-containing protein 38 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN23]
Coordinates
chr3:+:18514266..18516131
Molecular Weight (calculated)
26723.7 Da
IEP (calculated)
8.036
GRAVY (calculated)
-0.255
Length
247 amino acids
Sequence
(BLAST)
(BLAST)
001: MSCNGCRVLR KGCSENCILR PCIQWIESPE AQGHATVFVA KFFGRAGLMS FISAVPESQC PALFQSLLYE ACGRTVNPVN GAVGLLWTGN WNVCQAAVET
101: VLRGGSLKPI PELLNGGGFA GFPSPTSDEA SEICTEMLNL RKADDSGDRN IYHHCRFSSS RSRSRSTASP PKRKRLSSEQ QPSSELDLSL IPIYPIKTLP
201: FKEDTPSMYS EESVTTVSFQ NNNAGDRYVR CGGGGGGATT KLLNLFA
101: VLRGGSLKPI PELLNGGGFA GFPSPTSDEA SEICTEMLNL RKADDSGDRN IYHHCRFSSS RSRSRSTASP PKRKRLSSEQ QPSSELDLSL IPIYPIKTLP
201: FKEDTPSMYS EESVTTVSFQ NNNAGDRYVR CGGGGGGATT KLLNLFA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.