Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY34735 | Canola | nucleus | 62.74 | 87.77 |
| Bra021433.1-P | Field mustard | nucleus | 84.79 | 84.47 |
| CDX74249 | Canola | nucleus | 80.23 | 81.15 |
| CDX91999 | Canola | nucleus | 80.23 | 81.15 |
| CDY54302 | Canola | cytosol, mitochondrion, nucleus | 38.02 | 67.57 |
| AT1G67100.1 | Thale cress | mitochondrion | 56.65 | 63.95 |
| GSMUA_Achr4P13790_001 | Banana | mitochondrion | 50.57 | 57.33 |
| GSMUA_Achr4P06820_001 | Banana | cytosol, mitochondrion, plastid | 50.19 | 56.41 |
| GSMUA_Achr9P21360_001 | Banana | mitochondrion | 46.77 | 54.91 |
| VIT_01s0011g03540.t01 | Wine grape | nucleus | 51.71 | 53.75 |
| Solyc02g085910.2.1 | Tomato | mitochondrion | 54.37 | 52.77 |
| PGSC0003DMT400032938 | Potato | mitochondrion | 54.75 | 52.75 |
| AT1G68510.1 | Thale cress | mitochondrion, nucleus | 40.3 | 45.49 |
| GSMUA_Achr4P03700_001 | Banana | cytosol, mitochondrion, nucleus | 50.19 | 40.49 |
| AT3G49940.1 | Thale cress | nucleus | 32.32 | 34.41 |
| AT4G37540.1 | Thale cress | nucleus | 30.42 | 33.33 |
| AT5G67420.2 | Thale cress | nucleus | 31.18 | 32.8 |
| Os01t0129600-00 | Rice | cytosol | 31.94 | 24.78 |
Protein Annotations
| MapMan:15.5.24 | EntrezGene:821112 | ProteinID:AAF32462.1 | EMBL:AB473871 | ProteinID:AEE73827.1 | EMBL:AF447895 |
| ArrayExpress:AT3G02550 | EnsemblPlantsGene:AT3G02550 | RefSeq:AT3G02550 | TAIR:AT3G02550 | RefSeq:AT3G02550-TAIR-G | EnsemblPlants:AT3G02550.1 |
| TAIR:AT3G02550.1 | EMBL:AY086061 | EMBL:AY090370 | EMBL:AY122896 | Unigene:At.22633 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR004883 |
| Symbol:LBD41 | InterPro:LOB | InterPro:LOBD | RefSeq:NP_566175.1 | PFAM:PF03195 | PIRSF:PIRSF038155 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009052 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025281 | PFscan:PS50891 | PANTHER:PTHR31304 | PANTHER:PTHR31304:SF8 | UniProt:Q9M886 |
| UniParc:UPI000012E249 | SEG:seg | : | : | : | : |
Description
LBD41LOB domain-containing protein 41 [Source:UniProtKB/Swiss-Prot;Acc:Q9M886]
Coordinates
chr3:-:536500..538126
Molecular Weight (calculated)
28418.1 Da
IEP (calculated)
8.490
GRAVY (calculated)
-0.245
Length
263 amino acids
Sequence
(BLAST)
(BLAST)
001: MRMSCNGCRV LRKGCSEDCS IRPCLAWIKS PEAQANATVF LAKFYGRAGL MNLINAGPNH LRPGIFRSLL HEACGRIVNP IYGSVGLLWS GNWQLCQDAV
101: EAVMKGEPVK EIATDAATIG QGPPLKIYDI RHISKDDNSA AAATGSTDLK LAKTRRAKRV STVAIQAESE GKSDEASHDS SLSHQSEIVA AHEGESKESE
201: SNVSEVLAFS PPAVKGSGEI KLDLTLRLEP VSRAYHVVPV KKRRIGVFGT CQKESTCKTE LML
101: EAVMKGEPVK EIATDAATIG QGPPLKIYDI RHISKDDNSA AAATGSTDLK LAKTRRAKRV STVAIQAESE GKSDEASHDS SLSHQSEIVA AHEGESKESE
201: SNVSEVLAFS PPAVKGSGEI KLDLTLRLEP VSRAYHVVPV KKRRIGVFGT CQKESTCKTE LML
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.