Factsheet for Bra021433.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY34735	Canola	nucleus	70.45	98.94
AT3G02550.1	Thale cress	nucleus	84.47	84.79
CDY54302	Canola	cytosol, mitochondrion, nucleus	39.02	69.59
GSMUA_Achr4P06820_001	Banana	cytosol, mitochondrion, plastid	52.65	59.4
GSMUA_Achr4P13790_001	Banana	mitochondrion	50.76	57.76
GSMUA_Achr9P21360_001	Banana	mitochondrion	48.11	56.7
VIT_01s0011g03540.t01	Wine grape	nucleus	52.65	54.94
Solyc02g085910.2.1	Tomato	mitochondrion	56.06	54.61
PGSC0003DMT400032938	Potato	mitochondrion	56.44	54.58
Bra004315.1-P	Field mustard	mitochondrion	42.42	47.26
GSMUA_Achr4P03700_001	Banana	cytosol, mitochondrion, nucleus	51.89	42.02
Bra012913.1-P	Field mustard	nucleus	31.44	34.44
Bra037847.1-P	Field mustard	nucleus	30.68	34.32
Bra011772.1-P	Field mustard	nucleus	30.68	34.18
Bra036040.1-P	Field mustard	nucleus	31.44	33.88
Bra031833.1-P	Field mustard	nucleus	30.68	33.61
Bra017831.1-P	Field mustard	nucleus	28.79	32.76
Bra012164.1-P	Field mustard	nucleus	31.44	32.42
Os01t0129600-00	Rice	cytosol	34.85	27.14

Protein Annotations

EnsemblPlants:Bra021433.1	EnsemblPlants:Bra021433.1-P	EnsemblPlantsGene:Bra021433	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR004883	InterPro:LOB	InterPro:LOBD
PANTHER:PTHR31304	PANTHER:PTHR31304:SF8	PFAM:PF03195	PFscan:PS50891	PIRSF:PIRSF038155	SEG:seg
UniParc:UPI0002544AE1	UniProt:M4DY37	MapMan:15.5.24	:	:	:

Description

AT3G02550 (E=7e-107) LBD41 | LBD41 (LOB DOMAIN-CONTAINING PROTEIN 41)

Coordinates

chrA01:-:25233613..25234491

Molecular Weight (calculated)

28182.7 Da

IEP (calculated)

8.760

GRAVY (calculated)

-0.309

Length

264 amino acids

Sequence
(BLAST)

001: MRMSCNGCRV LRKGCSDDCS IRPCLGWIKS PEAQANATVF LAKFYGRAGL MNLINAGPDH LRPGIFRSLL HEACGRIVNP IYGSVGLLWS GNWQLCQAAV
101: EAVMKGEPIT EMATDAATSG QGPPLKMYDI RHISKGENSP AAAAAAGSTD RKRGKTRRAK RVAAVAKPAE SGGGEASHHS SLSHQSEVVV APHEGESKET
201: ESNSSEVMTF SPPAVKGSGE IKLDLTLGLE PVSRADHVVP VKKRKMGVFS TWQEESSCKT DLVL

Best Arabidopsis Sequence Match ( AT3G02550.1 )
(BLAST)

001: MRMSCNGCRV LRKGCSEDCS IRPCLAWIKS PEAQANATVF LAKFYGRAGL MNLINAGPNH LRPGIFRSLL HEACGRIVNP IYGSVGLLWS GNWQLCQDAV
101: EAVMKGEPVK EIATDAATIG QGPPLKIYDI RHISKDDNSA AAATGSTDLK LAKTRRAKRV STVAIQAESE GKSDEASHDS SLSHQSEIVA AHEGESKESE
201: SNVSEVLAFS PPAVKGSGEI KLDLTLRLEP VSRAYHVVPV KKRRIGVFGT CQKESTCKTE LML

Arabidopsis Description

LBD41LOB domain-containing protein 41 [Source:UniProtKB/Swiss-Prot;Acc:Q9M886]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.