Factsheet for VIT_01s0011g03540.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY54302	Canola	cytosol, mitochondrion, nucleus	35.18	60.14
CDY34735	Canola	nucleus	43.48	58.51
GSMUA_Achr4P06820_001	Banana	cytosol, mitochondrion, plastid	53.36	57.69
GSMUA_Achr4P13790_001	Banana	mitochondrion	51.38	56.03
GSMUA_Achr9P21360_001	Banana	mitochondrion	49.41	55.8
CDX74249	Canola	nucleus	54.15	52.69
Bra021433.1-P	Field mustard	nucleus	54.94	52.65
VIT_14s0006g02950.t01	Wine grape	mitochondrion	58.89	52.65
VIT_17s0000g03720.t01	Wine grape	mitochondrion, nucleus, plastid	56.52	52.57
CDX91999	Canola	nucleus	53.75	52.31
PGSC0003DMT400032938	Potato	mitochondrion	56.13	52.01
AT3G02550.1	Thale cress	nucleus	53.75	51.71
Solyc02g085910.2.1	Tomato	mitochondrion	54.94	51.29
VIT_01s0011g03530.t01	Wine grape	cytosol, nucleus, plastid	47.43	49.79
GSMUA_Achr4P03700_001	Banana	cytosol, mitochondrion, nucleus	52.57	40.8
VIT_07s0129g00330.t01	Wine grape	nucleus	36.36	40.35
VIT_03s0091g00670.t01	Wine grape	cytosol	30.43	39.49
VIT_18s0001g09250.t01	Wine grape	nucleus	33.2	37.84
Os01t0129600-00	Rice	cytosol	33.99	25.37

Protein Annotations

EntrezGene:100254184	wikigene:100254184	MapMan:15.5.24	ProteinID:CCB50913	ProteinID:CCB50913.1	UniProt:F6HEW8
EMBL:FN595752	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:IPR004883	InterPro:LOB	EntrezGene:LOC100254184	wikigene:LOC100254184	PFAM:PF03195
PFscan:PS50891	PANTHER:PTHR31304	PANTHER:PTHR31304:SF8	TIGR:TC55931	UniParc:UPI00015C7E3C	ArrayExpress:VIT_01s0011g03540
EnsemblPlantsGene:VIT_01s0011g03540	EnsemblPlants:VIT_01s0011g03540.t01	unigene:Vvi.4617	RefSeq:XP_002282602	RefSeq:XP_002282602.1	:

Description

No Description!

Coordinates

chr1:-:3210273..3211389

Molecular Weight (calculated)

27970.4 Da

IEP (calculated)

8.214

GRAVY (calculated)

-0.388

Length

253 amino acids

Sequence
(BLAST)

001: MRMSCNGCRV LRKGCSDDCS LRPCLEWIKT PESQANATVF LAKFYGRAGL MNLLNAGPEH LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GNWNHCQNAV
101: DAVLGGSQIM EVPCDTAAIR PILPLKAYDI RHLSKDANSP HDLHKAKTRS RFKRCGARSK PHLDSAEFCN PGWNQFSPVD YNRTPSHDSS LIQQETDSMF
201: SVETVEASLA TPPKPNQLLK SDGQTDKTEA GLELTLGFYP ISRPHACKLE LGP

Best Arabidopsis Sequence Match ( AT3G02550.1 )
(BLAST)

001: MRMSCNGCRV LRKGCSEDCS IRPCLAWIKS PEAQANATVF LAKFYGRAGL MNLINAGPNH LRPGIFRSLL HEACGRIVNP IYGSVGLLWS GNWQLCQDAV
101: EAVMKGEPVK EIATDAATIG QGPPLKIYDI RHISKDDNSA AAATGSTDLK LAKTRRAKRV STVAIQAESE GKSDEASHDS SLSHQSEIVA AHEGESKESE
201: SNVSEVLAFS PPAVKGSGEI KLDLTLRLEP VSRAYHVVPV KKRRIGVFGT CQKESTCKTE LML

Arabidopsis Description

LBD41LOB domain-containing protein 41 [Source:UniProtKB/Swiss-Prot;Acc:Q9M886]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.