Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 3
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400014630 | Potato | mitochondrion, nucleus, plastid | 51.84 | 57.79 |
| Solyc03g119530.2.1 | Tomato | cytosol, nucleus, plastid | 51.84 | 57.09 |
| VIT_01s0011g03540.t01 | Wine grape | nucleus | 52.57 | 56.52 |
| VIT_14s0006g02950.t01 | Wine grape | mitochondrion | 55.51 | 53.36 |
| VIT_01s0011g03530.t01 | Wine grape | cytosol, nucleus, plastid | 44.12 | 49.79 |
| KRH48482 | Soybean | mitochondrion | 38.97 | 45.69 |
| HORVU2Hr1G066080.1 | Barley | nucleus | 50.0 | 45.03 |
| TraesCS2B01G289800.1 | Wheat | nucleus | 50.0 | 45.03 |
| TraesCS2D01G270100.1 | Wheat | nucleus | 50.0 | 44.88 |
| TraesCS2A01G271300.1 | Wheat | nucleus | 50.0 | 44.3 |
| VIT_07s0129g00330.t01 | Wine grape | nucleus | 33.82 | 40.35 |
| VIT_03s0091g00670.t01 | Wine grape | cytosol | 28.31 | 39.49 |
| VIT_18s0001g09250.t01 | Wine grape | nucleus | 30.88 | 37.84 |
Protein Annotations
| ArrayExpress:VIT_17s0000g03720 | EMBL:FN594950 | EnsemblPlants:VIT_17s0000g03720.t01 | EnsemblPlantsGene:VIT_17s0000g03720 | EntrezGene:100245622 | EntrezGene:LOC100245622 |
| InterPro:IPR004883 | InterPro:LOB | PANTHER:PTHR31304 | PANTHER:PTHR31304:SF9 | PFAM:PF03195 | PFscan:PS50891 |
| ProteinID:CCB43219 | ProteinID:CCB43219.1 | RefSeq:XP_002276899 | RefSeq:XP_002276899.1 | TIGR:TC71013 | unigene:Vvi.15596 |
| UniParc:UPI00015CA034 | UniProt:F6GTL0 | wikigene:100245622 | wikigene:LOC100245622 | MapMan:15.5.24 | : |
Description
No Description!
Coordinates
chr17:-:3660358..3661423
Molecular Weight (calculated)
29481.1 Da
IEP (calculated)
7.642
GRAVY (calculated)
-0.310
Length
272 amino acids
Sequence
(BLAST)
(BLAST)
001: MRMSCNGCRV LRKGCNDSCT LRPCLQWIKN PDFQANATVF LAKFYGRAGL INLINAGPEH LRPAIFRSLL YEACGRIVNP IYGSAGLLWS GSWQLCQSAV
101: EAVLSGAPIM QISAESAVSS MSPPLKAGDI RHVSKDENSA GSSHELHKVK SRGRFKRSSG KPRARVESAA EFDESAGVIL SRCYKSELSR DSRVSHPGSR
201: ESGEADSMSV ETVEASLVKP TRDGSDVELE LTLGLEPIPK VQKACAVVRE KEEMAGSEDD TCKVELALEY SG
101: EAVLSGAPIM QISAESAVSS MSPPLKAGDI RHVSKDENSA GSSHELHKVK SRGRFKRSSG KPRARVESAA EFDESAGVIL SRCYKSELSR DSRVSHPGSR
201: ESGEADSMSV ETVEASLVKP TRDGSDVELE LTLGLEPIPK VQKACAVVRE KEEMAGSEDD TCKVELALEY SG
001: MRMSCNGCRV LRKGCSEDCS IRPCLAWIKS PEAQANATVF LAKFYGRAGL MNLINAGPNH LRPGIFRSLL HEACGRIVNP IYGSVGLLWS GNWQLCQDAV
101: EAVMKGEPVK EIATDAATIG QGPPLKIYDI RHISKDDNSA AAATGSTDLK LAKTRRAKRV STVAIQAESE GKSDEASHDS SLSHQSEIVA AHEGESKESE
201: SNVSEVLAFS PPAVKGSGEI KLDLTLRLEP VSRAYHVVPV KKRRIGVFGT CQKESTCKTE LML
101: EAVMKGEPVK EIATDAATIG QGPPLKIYDI RHISKDDNSA AAATGSTDLK LAKTRRAKRV STVAIQAESE GKSDEASHDS SLSHQSEIVA AHEGESKESE
201: SNVSEVLAFS PPAVKGSGEI KLDLTLRLEP VSRAYHVVPV KKRRIGVFGT CQKESTCKTE LML
Arabidopsis Description
LBD41LOB domain-containing protein 41 [Source:UniProtKB/Swiss-Prot;Acc:Q9M886]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.