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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:
  • nucleus 4
  • mitochondrion 2
  • cytosol 1
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, nucleus, plastid
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
EpiLoc:nucleus
iPSORT:mitochondrion
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:nucleus
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400014630 Potato mitochondrion, nucleus, plastid 94.33 95.49
VIT_17s0000g03720.t01 Wine grape mitochondrion, nucleus, plastid 57.09 51.84
KRH48482 Soybean mitochondrion 47.77 50.86
Solyc02g085910.2.1 Tomato mitochondrion 53.85 49.08
Solyc05g009320.2.1 Tomato mitochondrion 48.58 47.24
HORVU2Hr1G066080.1 Barley nucleus 56.28 46.03
TraesCS2B01G289800.1 Wheat nucleus 56.28 46.03
TraesCS2D01G270100.1 Wheat nucleus 55.87 45.54
TraesCS2A01G271300.1 Wheat nucleus 56.28 45.28
Solyc02g092550.2.1 Tomato extracellular 32.39 36.7
Solyc04g077990.2.1 Tomato nucleus, plasma membrane, plastid 29.55 35.78
Solyc01g107190.2.1 Tomato mitochondrion, nucleus 29.96 34.1
Protein Annotations
EnsemblPlants:Solyc03g119530.2.1EnsemblPlantsGene:Solyc03g119530.2InterPro:IPR004883InterPro:LOBPANTHER:PTHR31304PANTHER:PTHR31304:SF18
PFAM:PF03195PFscan:PS50891UniParc:UPI00027665D7UniProt:K4BMA2MapMan:15.5.24:
Description
No Description!
Coordinates
chr3:+:68109947..68111071
Molecular Weight (calculated)
26953.0 Da
IEP (calculated)
6.866
GRAVY (calculated)
-0.373
Length
247 amino acids
Sequence
(BLAST)
001: MRLSCNGCRV LRKGCNEKCS IKPCLQWIQS PEAQSNATLF LAKFYGRAGL LNLINSGPDH LRPAIFRSLL YEACGRIVNP IYGSTGLLTS GNWPLCQAAV
101: EAVLNGAPIV KLSPDSAADA TSPPLKACDI RHVSRENISD PDLHKVKSRT RFKRVSAKPE PRKQSPDVDD AARVMWSWCH KEEEEAVGSP SLNSGLSQQR
201: TEEPSRDGES GDVDSGSVET VEALPAKLDE SDVCLELTLG WLPLIRS
Best Arabidopsis Sequence Match ( AT3G02550.1 )
(BLAST)
001: MRMSCNGCRV LRKGCSEDCS IRPCLAWIKS PEAQANATVF LAKFYGRAGL MNLINAGPNH LRPGIFRSLL HEACGRIVNP IYGSVGLLWS GNWQLCQDAV
101: EAVMKGEPVK EIATDAATIG QGPPLKIYDI RHISKDDNSA AAATGSTDLK LAKTRRAKRV STVAIQAESE GKSDEASHDS SLSHQSEIVA AHEGESKESE
201: SNVSEVLAFS PPAVKGSGEI KLDLTLRLEP VSRAYHVVPV KKRRIGVFGT CQKESTCKTE LML
Arabidopsis Description
LBD41LOB domain-containing protein 41 [Source:UniProtKB/Swiss-Prot;Acc:Q9M886]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.