Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 3
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g119530.2.1 | Tomato | cytosol, nucleus, plastid | 95.49 | 94.33 |
| VIT_17s0000g03720.t01 | Wine grape | mitochondrion, nucleus, plastid | 57.79 | 51.84 |
| KRH48482 | Soybean | mitochondrion | 47.95 | 50.43 |
| PGSC0003DMT400032938 | Potato | mitochondrion | 54.51 | 48.72 |
| PGSC0003DMT400037711 | Potato | mitochondrion | 50.0 | 48.22 |
| HORVU2Hr1G066080.1 | Barley | nucleus | 56.56 | 45.7 |
| TraesCS2B01G289800.1 | Wheat | nucleus | 56.56 | 45.7 |
| TraesCS2D01G270100.1 | Wheat | nucleus | 56.15 | 45.21 |
| TraesCS2A01G271300.1 | Wheat | nucleus | 56.15 | 44.63 |
| PGSC0003DMT400064185 | Potato | nucleus | 33.2 | 38.21 |
| PGSC0003DMT400066165 | Potato | mitochondrion, nucleus | 30.33 | 34.1 |
| PGSC0003DMT400055393 | Potato | nucleus | 28.28 | 33.82 |
Protein Annotations
| EMBL:JX576218 | EnsemblPlants:PGSC0003DMT400014630 | EnsemblPlantsGene:PGSC0003DMG400005719 | InterPro:IPR004883 | InterPro:LOB | PANTHER:PTHR31304 |
| PANTHER:PTHR31304:SF18 | PFAM:PF03195 | PFscan:PS50891 | PGSC:PGSC0003DMG400005719 | ProteinID:AFW90574 | ProteinID:AFW90574.1 |
| SEG:seg | UniParc:UPI000296A12B | UniProt:M1A4L3 | MapMan:15.5.24 | : | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400005719]
Coordinates
chr3:+:58921448..58922603
Molecular Weight (calculated)
26452.3 Da
IEP (calculated)
6.874
GRAVY (calculated)
-0.361
Length
244 amino acids
Sequence
(BLAST)
(BLAST)
001: MRLSCNGCRV LRKGCNEKCS IKPCLQWIQS PEAQSNATLF LAKFYGRAGL LNLINSGPDH LRPAIFRSLL YEACGRIVNP IYGSTGLLTS GNWPLCQAAV
101: EAVLNGAPIV KLSVDSAADA TSPSLKACDI RHVSRENNSD PDLHKVKSKT RFKRVSAKPE PRNQSPDVDD AARVMWSWCH KEEEEAVGSP SLNSGLSQQR
201: TEEPSREGES GDVDSGSVET VEAFPASSDV GLELTLGLLP LMRS
101: EAVLNGAPIV KLSVDSAADA TSPSLKACDI RHVSRENNSD PDLHKVKSKT RFKRVSAKPE PRNQSPDVDD AARVMWSWCH KEEEEAVGSP SLNSGLSQQR
201: TEEPSREGES GDVDSGSVET VEAFPASSDV GLELTLGLLP LMRS
001: MRMSCNGCRV LRKGCSEDCS IRPCLAWIKS PEAQANATVF LAKFYGRAGL MNLINAGPNH LRPGIFRSLL HEACGRIVNP IYGSVGLLWS GNWQLCQDAV
101: EAVMKGEPVK EIATDAATIG QGPPLKIYDI RHISKDDNSA AAATGSTDLK LAKTRRAKRV STVAIQAESE GKSDEASHDS SLSHQSEIVA AHEGESKESE
201: SNVSEVLAFS PPAVKGSGEI KLDLTLRLEP VSRAYHVVPV KKRRIGVFGT CQKESTCKTE LML
101: EAVMKGEPVK EIATDAATIG QGPPLKIYDI RHISKDDNSA AAATGSTDLK LAKTRRAKRV STVAIQAESE GKSDEASHDS SLSHQSEIVA AHEGESKESE
201: SNVSEVLAFS PPAVKGSGEI KLDLTLRLEP VSRAYHVVPV KKRRIGVFGT CQKESTCKTE LML
Arabidopsis Description
LBD41LOB domain-containing protein 41 [Source:UniProtKB/Swiss-Prot;Acc:Q9M886]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.