CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

nucleus 4
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG91097	Soybean	mitochondrion, nucleus, plasma membrane	88.89	88.89
KRH05602	Soybean	nucleus	25.15	70.49
GSMUA_Achr3P18860_001	Banana	cytosol	55.56	50.0
KRH15442	Soybean	mitochondrion, nucleus	49.12	49.12
GSMUA_Achr6P07770_001	Banana	mitochondrion	52.63	48.91
GSMUA_Achr3P30130_001	Banana	nucleus	56.14	46.15
KRH61393	Soybean	nucleus	49.71	45.95
GSMUA_Achr7P26260_001	Banana	mitochondrion	56.73	45.75
VIT_03s0091g00670.t01	Wine grape	cytosol	52.05	45.64
GSMUA_Achr4P14150_001	Banana	mitochondrion	56.14	44.44
GSMUA_Achr2P13440_001	Banana	mitochondrion, nucleus, plastid	52.63	43.06
PGSC0003DMT400066165	Potato	mitochondrion, nucleus	53.8	42.4
KRH58049	Soybean	mitochondrion, nucleus	56.14	42.29
Solyc01g107190.2.1	Tomato	mitochondrion, nucleus	53.22	41.94
GSMUA_Achr4P32550_001	Banana	mitochondrion	50.88	41.43
KRH04451	Soybean	nucleus	55.56	41.3
KRH28374	Soybean	nucleus	56.14	40.0
KRH77108	Soybean	nucleus	56.14	39.51
Os03t0609500-01	Rice	cytosol, nucleus, plastid	47.37	34.91
HORVU4Hr1G013380.2	Barley	nucleus	46.2	34.65
TraesCS4B01G078800.1	Wheat	nucleus	46.2	34.35
TraesCS4D01G077600.1	Wheat	mitochondrion, nucleus, plastid	46.2	34.35
TraesCS4A01G236200.1	Wheat	mitochondrion, nucleus, plastid	46.78	34.33
KXG38039	Sorghum	mitochondrion, nucleus, plastid	48.54	33.6
Zm00001d033347_P001	Maize	mitochondrion, nucleus, plastid	47.37	32.27
KRH05603	Soybean	cytosol, extracellular	19.88	32.08
KRH45269	Soybean	nucleus	38.01	29.68
KRG90816	Soybean	nucleus	35.09	26.79
KRH48482	Soybean	mitochondrion	35.09	25.86
KRH18248	Soybean	nucleus	42.11	25.0
KRG93864	Soybean	nucleus	42.11	24.57
KRH46923	Soybean	mitochondrion	41.52	23.99
KRH01759	Soybean	mitochondrion	41.52	23.59

Protein Annotations

EMBL:ACUP02006698	EnsemblPlants:KRH35680	EnsemblPlantsGene:GLYMA_10G258100	EntrezGene:100803780	InterPro:IPR004883	InterPro:LOB
PANTHER:PTHR31304	PANTHER:PTHR31304:SF1	PFAM:PF03195	PFscan:PS50891	ProteinID:KRH35680	ProteinID:KRH35680.1
SEG:seg	UniParc:UPI000233CDB7	UniProt:K7LLG5	MapMan:15.5.24	:	:

Description

hypothetical protein

Coordinates

chr10:+:48445797..48447526

Molecular Weight (calculated)

18739.7 Da

IEP (calculated)

7.709

GRAVY (calculated)

-0.019

Length

171 amino acids

Sequence
(BLAST)

001: MSCNGCRVLR KGCSDDCMLR HCLLWIENPQ AQAHATLFVT KFFGRATLMS FLSTVPPNQR SALFESLLYE AVGRTINPVN GAVGLLWTGN WHLCQMGVEK
101: VLRGGAAAAL TPLIPQVITT SVVRGEIMCH QPKKQCVGTP SEDEESETST FASRPQDSAP QPQTNLLTLF F

Best Arabidopsis Sequence Match ( AT3G49940.1 )
(BLAST)

001: MSCNGCRVLR KGCSENCILR PCIQWIESPE AQGHATVFVA KFFGRAGLMS FISAVPESQC PALFQSLLYE ACGRTVNPVN GAVGLLWTGN WNVCQAAVET
101: VLRGGSLKPI PELLNGGGFA GFPSPTSDEA SEICTEMLNL RKADDSGDRN IYHHCRFSSS RSRSRSTASP PKRKRLSSEQ QPSSELDLSL IPIYPIKTLP
201: FKEDTPSMYS EESVTTVSFQ NNNAGDRYVR CGGGGGGATT KLLNLFA

Arabidopsis Description

LBD38LOB domain-containing protein 38 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN23]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.