Factsheet for TraesCS3D01G091700.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

mitochondrion 2
cytosol 1
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G106900.1	Wheat	cytosol, mitochondrion, nucleus	90.91	91.53
HORVU3Hr1G016320.1	Barley	cytosol, nucleus, plastid	83.84	88.3
Os01t0511000-01	Rice	cytosol, nucleus, plastid	37.37	59.68
TraesCS4D01G354200.1	Wheat	nucleus	54.88	59.27
TraesCS4D01G354100.1	Wheat	cytosol, nucleus, plastid	56.23	56.04
Zm00001d010751_P001	Maize	cytosol, mitochondrion, nucleus	53.54	50.8
Zm00001d038717_P001	Maize	cytosol, mitochondrion, nucleus	53.54	49.69
TraesCS2D01G270100.1	Wheat	nucleus	49.83	48.84
AT1G68510.1	Thale cress	mitochondrion, nucleus	37.71	48.07
Bra004315.1-P	Field mustard	mitochondrion	37.04	46.41
CDX96013	Canola	mitochondrion	37.04	46.41
Zm00001d029506_P001	Maize	cytosol, mitochondrion, nucleus, plastid	48.82	46.33
PGSC0003DMT400037711	Potato	mitochondrion	39.39	46.25
KRH45269	Soybean	nucleus	34.01	46.12
OQU92400	Sorghum	mitochondrion, nucleus, plastid	50.84	46.04
VIT_01s0011g03530.t01	Wine grape	cytosol, nucleus, plastid	37.04	45.64
KRG90816	Soybean	nucleus	34.34	45.54
CDY38588	Canola	cytosol, mitochondrion, nucleus	36.7	45.42
Solyc05g009320.2.1	Tomato	mitochondrion	38.72	45.28
Zm00001d010749_P001	Maize	plastid	42.76	44.88
KXG22356	Sorghum	plastid	46.46	41.57
TraesCS4D01G077600.1	Wheat	mitochondrion, nucleus, plastid	26.94	34.78
TraesCS2D01G193400.1	Wheat	cytosol, nucleus, plastid	21.21	25.93

Protein Annotations

EnsemblPlants:TraesCS3D01G091700.1	EnsemblPlantsGene:TraesCS3D01G091700	InterPro:IPR004883	InterPro:LOB	PANTHER:PTHR31304	PANTHER:PTHR31304:SF9
PFAM:PF03195	PFscan:PS50891	SEG:seg	MapMan:15.5.24	:	:

Description

No Description!

Coordinates

chr3D:-:46470900..46471988

Molecular Weight (calculated)

30949.4 Da

IEP (calculated)

7.071

GRAVY (calculated)

-0.221

Length

297 amino acids

Sequence
(BLAST)

001: MRMSCNGCRV LRKGCGEGCT IRPCLEWIRS ADAQANATVF LAKFYGRAGL LNLLAADDAG LRPALFRSLL YEACGRMVNP VYGSVGLLWS GQWGACQAAV
101: EAVLKGRPIV RVTSDAPLTA CDIRHVAKAD RPAASPEAAG TLLGVSCAGR TGFKRASSST AKSKTKTKSF SGAKHNDGLD RAPSHEESAG SHDHGSHVED
201: GGMAVEQARG DESSVGTEVD AGSHVSQAEH SPVPPAHQVA KDEEAHDDEI GLELTLGFQP VTPRVVARSP PAGARFGASS SSAESSHIGL LLELPVS

Best Arabidopsis Sequence Match ( AT3G02550.1 )
(BLAST)

001: MRMSCNGCRV LRKGCSEDCS IRPCLAWIKS PEAQANATVF LAKFYGRAGL MNLINAGPNH LRPGIFRSLL HEACGRIVNP IYGSVGLLWS GNWQLCQDAV
101: EAVMKGEPVK EIATDAATIG QGPPLKIYDI RHISKDDNSA AAATGSTDLK LAKTRRAKRV STVAIQAESE GKSDEASHDS SLSHQSEIVA AHEGESKESE
201: SNVSEVLAFS PPAVKGSGEI KLDLTLRLEP VSRAYHVVPV KKRRIGVFGT CQKESTCKTE LML

Arabidopsis Description

LBD41LOB domain-containing protein 41 [Source:UniProtKB/Swiss-Prot;Acc:Q9M886]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.